Co-expression analysis

Gene ID Zm.7750.3.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g62690: TUB2 (HF=3e-35)
Module size 6 genes
NF 0.64
%ile 85.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4658.40.99Zm.7750.3.S1_atAY105255.1--3e-35At5g62690TUB2O.I.H.G.S.X.
0.7389.90.99ZmAffx.1142.1.A1_atAW399873--2e+0At5g47550cysteine protease inhibitor, putative / cystatin, putativeO.I.H.G.S.X.
0.7188.20.99ZmAffx.1316.1.S1_at40794996-30--6e-1At1g78172unknown proteinO.I.H.G.S.X.
0.6785.80.99Zm.7830.1.S1_atBM080060nucleic acid binding protein-4e-1At2g03190ASK16 (ARABIDOPSIS SKP1-LIKE 16)O.I.H.G.S.X.
0.5571.60.99Zm.7016.1.A1_atAY103859.1--3e-1At5g44610MAP18 (Microtubule-associated Protein 18)O.I.H.G.S.X.
0.4352.80.99Zm.17818.1.A1_atCK145213--6e+0At5g52470FIB1 (FIBRILLARIN 1)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8395.60.99ZmAffx.356.1.S1_atAI670543--3e-3At5g09750HEC3 (HECATE 3)O.I.H.G.S.X.
0.6785.80.99Zm.12015.1.A1_atAY107802.1--5e-6At2g26910PDR4 (PLEIOTROPIC DRUG RESISTANCE 4)O.I.H.G.S.X.
0.6785.80.99Zm.6549.1.A1_atBM075679--9e+0At5g04910unknown proteinO.I.H.G.S.X.
0.6179.50.99Zm.1753.1.A1_a_atAF326484.1NOD26-like membrane integral protein ZmNIP2-1-5e-5At1g80760NIP6O.I.H.G.S.X.
0.6077.80.99Zm.8233.3.S1_x_atBQ294345hypothetical protein LOC100194283-5e-7At4g31580SRZ-22O.I.H.G.S.X.
0.5775.10.99Zm.8790.1.A1_atCF005102--7e+0At5g18150unknown proteinO.I.H.G.S.X.
0.5571.60.99Zm.4486.1.A1_atAI734407--3e+0At5g03345-O.I.H.G.S.X.
0.5369.10.99ZmAffx.192.1.S1_atAI668442--2e-1At1g51930zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5065.70.98ZmAffx.993.1.A1_atAI855127AIR12-3e+0Atmg01350-O.I.H.G.S.X.
0.5065.70.99Zm.2508.1.A1_atCD447996hypothetical protein LOC100280213-6e-2At5g06260nucleolar protein-relatedO.I.H.G.S.X.
0.5065.70.99Zm.8884.1.A1_atCF018008hypothetical protein LOC100280133-3e-9At3g48890ATMP2O.I.H.G.S.X.
0.5065.70.99Zm.9797.1.A1_atBM341227--4e+0At3g58180PBS lyase HEAT-like repeat-containing proteinO.I.H.G.S.X.
0.5065.70.99Zm.238.1.S1_atCO523309SBP-domain protein 4-4e-6At1g02065SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)O.I.H.G.S.X.
0.5065.70.99Zm.18808.1.A1_atCO526738--1e+0At1g02840SR1O.I.H.G.S.X.
0.4861.30.98ZmAffx.854.1.A1_atAI770665--8e-7At5g48900pectate lyase family proteinO.I.H.G.S.X.
0.4759.90.99Zm.629.1.S1_atAF127021.1RNA polymerase T phage-like 1-9e-15At1g68990DNA-directed RNA polymerase, mitochondrial (RPOMT)O.I.H.G.S.X.
0.4658.40.98ZmAffx.1039.1.S1_atAI881774--3e+0At2g43240nucleotide-sugar transmembrane transporter/ sugar:hydrogen symporterO.I.H.G.S.X.
0.4658.40.99ZmAffx.1151.1.A1_atAW424605anaphase-promoting complex subunit 10-3e+0At3g43431unknown proteinO.I.H.G.S.X.
0.4455.70.98Zm.8468.1.A1_s_atBM074266--6e+0At3g45480zinc ion bindingO.I.H.G.S.X.
0.4455.70.98Zm.9806.1.S1_atBM339423hypothetical protein LOC100278385-2e-2At2g47180AtGolS1 (Arabidopsis thaliana galactinol synthase 1)O.I.H.G.S.X.
0.4455.70.99Zm.4852.1.A1_atCO527893hypothetical protein LOC100192969-3e-2At4g39000AtGH9B17 (Arabidopsis thaliana glycosyl hydrolase 9B17)O.I.H.G.S.X.
0.4455.70.99ZmAffx.918.1.A1_atAI782957--8e-1At3g06750hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.4455.70.99Zm.9643.1.A1_s_atBM347294--3e+0At2g07721unknown proteinO.I.H.G.S.X.
0.4455.70.99ZmAffx.406.8.S1_atAI670243--2e-1At5g06870PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2)O.I.H.G.S.X.
0.4352.80.99Zm.8812.1.A1_a_atBM348823hypothetical protein LOC100273324 /// hypothetical protein LOC100274414-2e-7At1g16560Per1-like family proteinO.I.H.G.S.X.
0.4251.30.99Zm.33.1.S1_x_atM12144.1alpha zein 19kDa D2-7e-1At1g18265unknown proteinO.I.H.G.S.X.
0.4251.30.99ZmAffx.1104.1.A1_atAW191449hypothetical protein LOC100280210-2e-1At2g01960TET14 (TETRASPANIN14)O.I.H.G.S.X.
0.4048.50.98Zm.16898.1.A1_atBM267987Hypothetical protein LOC100216956-3e-1At4g24644unknown proteinO.I.H.G.S.X.
0.4048.50.98Zm.1271.1.S1_s_atBE238697--3e+0At5g23035-O.I.H.G.S.X.
0.4048.50.99ZmAffx.5.1.S1_atAY372246.1cellulose synthase catalytic subunit 12-4e-26At5g17420IRX3 (IRREGULAR XYLEM 3)O.I.H.G.S.X.
0.4048.50.99Zm.2442.1.A1_atBG841393hypothetical protein LOC100193531-2e-1At2g45190AFO (ABNORMAL FLORAL ORGANS)O.I.H.G.S.X.
0.4048.50.99Zm.12157.1.S1_a_atCF041742PIF-like orf1-6e-1At5g20180ribosomal protein L36 family proteinO.I.H.G.S.X.
0.3844.20.98Zm.1793.1.S1_atCF384581regulatory protein RecX-2e-3At3g13226regulatory protein RecX family proteinO.I.H.G.S.X.
0.3844.20.99ZmAffx.840.1.A1_atAI770592--2e-1At1g36940unknown proteinO.I.H.G.S.X.
0.3641.30.98Zm.14732.1.S1_atCB250091hypothetical protein LOC100192107-4e-12At3g22290unknown proteinO.I.H.G.S.X.
0.3641.30.99Zm.6312.1.A1_atCF043412--1e+0At3g20557unknown proteinO.I.H.G.S.X.
0.3641.30.99Zm.16504.2.S1_atCD438012Heat shock protein18c-6e+0At1g19910AVA-P2O.I.H.G.S.X.
0.3641.30.99Zm.10510.1.S1_atCA827057--1e+1At5g37040F-box family proteinO.I.H.G.S.X.
0.3641.30.99Zm.6069.1.A1_a_atAY104047.1--1e-17At2g4184040S ribosomal protein S2 (RPS2C)O.I.H.G.S.X.
0.3538.90.98Zm.14596.2.A1_atCD43824260S ribosomal protein L10-3-6e-53At1g14320SAC52 (SUPPRESSOR OF ACAULIS 52)O.I.H.G.S.X.
0.3538.90.98ZmAffx.928.1.S1_atAI795442--8e-1At5g24270SOS3 (SALT OVERLY SENSITIVE 3)O.I.H.G.S.X.
0.3538.90.99Zm.17475.1.S1_x_atCK368991Glutathione transferase13-4e+0At4g17940bindingO.I.H.G.S.X.
0.3538.90.99ZmAffx.917.1.S1_atAI782944--1e+1At5g26810pectinesterase family proteinO.I.H.G.S.X.
0.3437.20.97Zm.3892.16.S1_a_atAI734646Elongation factor 1 alpha-2e-16At1g35550elongation factor Tu C-terminal domain-containing proteinO.I.H.G.S.X.
0.3336.00.98Zm.3955.1.A1_atCF015847--5e-3At1g27330-O.I.H.G.S.X.
0.3336.00.99--O.I.H.G.S.X.
0.3336.00.99Zm.30.1.S1_a_atAF371264.115kD beta zein /// prolamin PPROL 17 /// 15 kDa zein protein-2e-1At5g60360AALP (Arabidopsis aleurain-like protease)O.I.H.G.S.X.
0.3336.00.99ZmAffx.827.1.S1_atAI770520Growth-regulating factor 8-like-3e+0At3g21610-O.I.H.G.S.X.
0.3336.00.99Zm.8181.1.A1_atBE643624hypothetical protein LOC100193608-2e-1At1g043502-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.3336.00.99ZmAffx.406.13.S1_atAI670444--5e+0At2g40316unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.696.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.696.4GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.195.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.595.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.094.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.692.9GSM202298B73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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