Co-expression analysis

Gene ID	Zm.7750.3.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g62690: TUB2 (HF=3e-35)
Module size	6 genes
NF	0.64
%ile	85.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	58.4	0.99	Zm.7750.3.S1_at	AY105255.1	-	-	3e-35	At5g62690	TUB2	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.99	ZmAffx.1142.1.A1_at	AW399873	-	-	2e+0	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.99	ZmAffx.1316.1.S1_at	40794996-30	-	-	6e-1	At1g78172	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.7830.1.S1_at	BM080060	nucleic acid binding protein	-	4e-1	At2g03190	ASK16 (ARABIDOPSIS SKP1-LIKE 16)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.99	Zm.7016.1.A1_at	AY103859.1	-	-	3e-1	At5g44610	MAP18 (Microtubule-associated Protein 18)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.99	Zm.17818.1.A1_at	CK145213	-	-	6e+0	At5g52470	FIB1 (FIBRILLARIN 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6	92.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the barley gene, Contig1516_s_at, orthologous to the query gene, Zm.7750.3.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	Contig1516_s_at	At5g62690	-	-	3e-72	At5g62700	TUB3	O.I.	H.G.	S.X.	Please select
0.91	98.1	Contig15168_at	At5g62690	-	-	1e-1	At1g11240	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	Contig6585_at	At5g62690	-	-	1e-8	At5g58620	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	Contig3870_at	At5g62690	-	-	4e-44	At5g20570	RBX1 (RING-BOX 1)	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig7389_at	At5g62690	-	-	1e-2	At3g26180	CYP71B20	O.I.	H.G.	S.X.	Please select
0.55	72.0	Contig13485_s_at	At5g62690	-	-	4e+0	At5g35631	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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