Co-expression analysis

Gene ID	Zm.7739.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g49260: - (HF=6e+0)
Module size	13 genes
NF	0.50
%ile	64.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	75.1	0.97	Zm.7739.1.A1_at	BQ538356	-	-	6e+0	At1g49260	-	O.I.	H.G.	S.X.	Please select
0.65	82.1	0.98	Zm.17724.1.S1_a_at	CF623515	hypothetical protein LOC100278419	-	1e+0	At3g56240	CCH (COPPER CHAPERONE)	O.I.	H.G.	S.X.	Please select
0.64	81.7	0.98	Zm.12433.1.S1_s_at	AY105016.1	tyrosyl-tRNA synthetase	-	4e-18	At2g33840	tRNA synthetase class I (W and Y) family protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.6228.1.A1_at	AI739920	-	-	1e+0	At1g64370	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.18278.1.S1_at	CK371368	-	-	1e-26	At3g52200	LTA3	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.98	Zm.9290.1.A1_at	AY108360.1	hypothetical protein LOC100192546	-	7e-1	At5g58260	-	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.98	Zm.13417.1.A1_at	CA400681	hypothetical protein LOC100193979	-	4e-1	At3g05830	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.9267.1.A1_at	BM267708	hypothetical protein AY107012 /// UPF0497 membrane protein 7	-	2e+0	At2g36210	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.98	Zm.11547.1.S1_at	CA827895	hypothetical protein LOC100276375	-	1e+1	At5g41520	40S ribosomal protein S10 (RPS10B)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.98	Zm.218.1.A1_a_at	AB016802.1	ABA stimulation MAP kinase	-	6e-42	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.98	Zm.1967.2.A1_at	CF637323	pre-mRNA-splicing factor prp45	-	6e-26	At1g77180	chromatin protein family	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.98	Zm.12433.1.S1_at	AY105016.1	tyrosyl-tRNA synthetase	-	4e-18	At2g33840	tRNA synthetase class I (W and Y) family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	Zm.12844.2.A1_a_at	CF623983	hypothetical protein LOC100194377	-	4e-10	At5g16540	ZFN3 (ZINC FINGER NUCLEASE 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.4	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320469	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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