Co-expression analysis

Gene ID	Zm.7734.1.A1_at
Gene name	hypothetical protein LOC100193498
Homology with Arabidopsis	Similar to At5g26170: WRKY50 (HF=3e-5)
Module size	36 genes
NF	0.50
%ile	64.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.9	0.92	Zm.7734.1.A1_at	BM334368	hypothetical protein LOC100193498	-	3e-5	At5g26170	WRKY50	O.I.	H.G.	S.X.	Please select
0.81	94.3	0.95	Zm.3401.1.A1_at	CK828003	hypothetical protein LOC100278685	-	1e+0	At5g57080	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.95	Zm.1083.1.S1_at	AF527618.1	methyl binding domain	-	9e-1	At1g11240	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	86.5	0.94	Zm.14437.1.S1_at	CA403877	RNA binding protein	-	3e+0	At5g66010	RNA binding / nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select
0.65	82.1	0.95	Zm.7138.2.S1_a_at	AY106462.1	cytidine deaminase-like /// cytidine deaminase-like	-	2e-20	At5g28050	cytidine/deoxycytidylate deaminase family protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.95	Zm.15089.1.S1_at	CN845421	hypothetical protein LOC100275959	-	6e+0	At5g55680	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.94	Zm.5851.15.A1_at	AI759130	-	-	9e-1	At2g04031	-	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.96	Zm.7332.1.S1_at	CF013037	kinesin-like protein9	-	2e-24	At3g16630	KINESIN-13A	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.96	Zm.10835.1.S1_at	BQ619575	-	-	1e-1	At4g25700	BETA-OHASE 1 (BETA-HYDROXYLASE 1)	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.96	Zm.7334.1.S1_at	CD975420	kinesin-like protein16	-	2e-25	At5g41310	kinesin motor protein-related	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.96	Zm.1101.1.S1_at	CK787135	-	-	2e+0	At5g43460	lesion inducing protein-related	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.95	Zm.7333.1.A1_at	BG268640	kinesin heavy chain	-	2e-9	At3g20150	kinesin motor family protein	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.93	ZmAffx.1098.1.S1_at	AW126565	-	-	3e+0	At1g71260	ATWHY2 (A. THALIANA WHIRLY 2)	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.94	Zm.3450.1.A1_at	AW066723	hypothetical protein LOC100191605	-	4e+0	At2g38695	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.96	Zm.14638.1.A1_at	BM335183	-	-	9e-1	At2g28060	protein kinase-related	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.96	Zm.8593.1.A1_at	BM341502	cystathionin beta synthase protein	-	2e-6	At4g36910	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.96	Zm.7138.1.S1_at	AY106584.1	hypothetical protein LOC100274743	-	4e-1	At3g16851	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	Zm.5851.11.A1_a_at	CO527835	MADS box protein	-	3e-16	At4g37550	formamidase, putative / formamide amidohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.94	Zm.5197.1.A1_at	AI612383	-	-	3e+0	At5g37990	S-adenosylmethionine-dependent methyltransferase/ methyltransferase	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.97	Zm.3944.1.S1_at	M29411.1	opaque endosperm2	-	9e-1	At4g02640	BZO2H1	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.95	Zm.4269.1.S1_at	AY111618.1	hypothetical protein LOC100194366	-	2e+0	At5g38895	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.96	Zm.350.1.S1_at	U62753.1	acidic ribosomal protein P2b	-	4e-1	At2g27710	60S acidic ribosomal protein P2 (RPP2B)	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.98	Zm.10811.7.S1_at	BG837489	Glycine-rich protein	-	7e-3	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.97	Zm.7031.1.A1_at	CO532209	CBL-interacting protein kinase	-	2e+0	At1g58460	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.93	Zm.19203.1.S1_at	CO520849	hypothetical protein LOC100193957	-	1e-5	At3g07220	transcriptional activator, putative	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.96	Zm.5860.2.A1_at	CF021535	Grx_C4 - glutaredoxin subgroup I	-	1e-7	At1g77370	glutaredoxin, putative	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.94	Zm.7136.1.S1_at	CO526700	NADPH-protochlorophyllide oxidoreductase	-	6e-11	At4g27440	PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B)	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.96	Zm.7016.1.S1_at	AY103859.1	-	-	3e-1	At5g44610	MAP18 (Microtubule-associated Protein 18)	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.93	Zm.19204.1.S1_at	CA404362	protein phosphatase 2C-like	-	1e-3	At1g09160	protein phosphatase 2C-related / PP2C-related	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.7574.1.A1_at	CO527472	ubiquitin fusion degradation protein 1	-	2e-16	At4g38930	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.10812.1.A1_at	CD976050	-	-	2e-4	At2g28450	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.1100.1.S1_at	AY107948.1	-	-	4e+0	At5g37475	translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.96	Zm.14648.1.A1_at	CB351045	hypothetical protein LOC100280346	-	3e-4	At3g24210	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.96	Zm.7363.1.A1_at	BM079340	SAUR55 - auxin-responsive SAUR family member	-	6e+0	At4g24950	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.96	Zm.16913.1.S1_at	BQ619268	GT1 protein	-	2e-24	At4g16370	ATOPT3 (OLIGOPEPTIDE TRANSPORTER)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.17408.1.A1_at	BE129731	hypothetical protein LOC100273071	-	4e-1	At2g41380	embryo-abundant protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.5	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM253269	ZM_4.5d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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