Co-expression analysis

Gene ID	Zm.7728.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g33700: protein phosphatase 2C, putative / PP2C, putative (HF=3e-3)
Module size	6 genes
NF	0.66
%ile	87.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.7728.1.A1_at	BM079644	-	-	3e-3	At2g33700	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.98	Zm.8175.1.A1_at	BM382448	-	-	5e-6	At2g39350	ABC transporter family protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.98	Zm.6941.1.A1_at	CF638044	-	-	4e-1	At3g46770	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.7868.1.S1_at	CF630485	hypothetical protein LOC100216779	-	4e-1	At1g15390	PDF1A (PEPTIDE DEFORMYLASE 1A)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.12656.1.S1_at	CF010887	-	-	5e+0	At5g07020	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.1046.1.S1_at	CF633990	-	-	2e+0	At5g28610	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.3	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6	92.9	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1619770_at, orthologous to the query gene, Zm.7728.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.6	1619770_at	At2g33700	hypothetical protein LOC100240944	-	2e-5	At3g62260	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.27	34.0	1621596_at	At2g33700	hypothetical protein LOC100260248	-	1e-3	At5g12310	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	1620250_at	At2g33700	hypothetical protein LOC100250521	-	8e-3	At4g08330	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	1614866_at	At2g33700	hypothetical protein LOC100251829	-	9e-28	At1g55255	-	O.I.	H.G.	S.X.	Please select
0.21	24.0	1620337_at	At2g33700	similar to ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5); calmodulin binding / cyclic nucleotide binding / potassium channel	-	2e-5	At5g62500	ATEB1B (END BINDING PROTEIN 1B)	O.I.	H.G.	S.X.	Please select
0.18	19.4	1611413_at	At2g33700	hypothetical protein LOC100258668	-	4e-26	At3g09840	CDC48 (CELL DIVISION CYCLE 48)	O.I.	H.G.	S.X.	Please select
0.17	18.2	1609578_at	At2g33700	hypothetical protein LOC100247401	-	5e-27	At2g17530	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	1611047_at	At2g33700	DnaJ protein-like	-	1e-27	At3g44110	ATJ3	O.I.	H.G.	S.X.	Please select
0.15	15.6	1621718_at	At2g33700	hypothetical protein LOC100244137	-	5e-26	At2g25940	ALPHA-VPE (alpha-vacuolar processing enzyme)	O.I.	H.G.	S.X.	Please select
0.09	9.4	1620352_at	At2g33700	hypothetical protein LOC100245299	-	9e-18	At1g11930	alanine racemase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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