CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.7728.1.A1_at

Gene name
Homology with Arabidopsis Similar to At2g33700: protein phosphatase 2C, putative / PP2C, putative (HF=3e-3)

Module size 6 genes

NF 0.66

%ile 87.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.98 Zm.7728.1.A1_at BM079644 - - 3e-3 At2g33700 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.71 88.2 0.98 Zm.8175.1.A1_at BM382448 - - 5e-6 At2g39350 ABC transporter family protein O.I. H.G. S.X.
0.57 75.1 0.98 Zm.6941.1.A1_at CF638044 - - 4e-1 At3g46770 transcriptional factor B3 family protein O.I. H.G. S.X.
0.55 71.6 0.98 Zm.7868.1.S1_at CF630485 hypothetical protein LOC100216779 - 4e-1 At1g15390 PDF1A (PEPTIDE DEFORMYLASE 1A) O.I. H.G. S.X.
0.50 65.7 0.97 Zm.12656.1.S1_at CF010887 - - 5e+0 At5g07020 proline-rich family protein O.I. H.G. S.X.
0.40 48.5 0.98 Zm.1046.1.S1_at CF633990 - - 2e+0 At5g28610 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.3 99.0 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9 98.8 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7 98.8 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4 98.8 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3 98.8 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8 98.7 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8 98.6 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6 98.6 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4 98.5 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6 92.9 GSM320457 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the rice gene, Os06g0179700, orthologous to the query gene, Zm.7728.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 60.9 Os06g0179700 At2g33700 - DNA-binding protein phosphatase 2C 6e-2 At2g33700 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.36 44.0 Os04g0590900 At2g33700 - RING/C3HC4/PHD zinc finger-like protein 4e-6 At3g03550 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.21 17.9 Os04g0691800 At2g33700 - C2 domain containing protein 2e-2 At3g23830 GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4) O.I. H.G. S.X.
0.21 17.9 Os03g0263400 At2g33700 - Mitochondrial phosphate transporter (Fragment) 1e-3 At5g14040 mitochondrial phosphate transporter O.I. H.G. S.X.
0.17 12.6 Os08g0532400 At2g33700 - Nodulin-like protein 5e-12 At3g01930 nodulin family protein O.I. H.G. S.X.
0.09 4.9 Os12g0511100 At2g33700 - Hypothetical protein 4e-1 At1g20875 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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