CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.7685.3.A1_a_at

Gene name
Homology with Arabidopsis Similar to At4g27810: unknown protein (HF=4e+0)

Module size 6 genes

NF 0.44

%ile 53.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 71.6 0.89 Zm.7685.3.A1_a_at BM268156 - - 4e+0 At4g27810 unknown protein O.I. H.G. S.X.
0.80 94.0 0.91 Zm.14983.2.A1_at AY109416.1 - - 3e-5 At5g27150 NHX1 (NA+/H+ EXCHANGER) O.I. H.G. S.X.
0.67 85.8 0.92 Zm.16779.1.A1_at CF626512 hypothetical protein LOC100216924 - 2e-3 At5g48810 CB5-D (CYTOCHROME B5 ISOFORM D) O.I. H.G. S.X.
0.67 85.8 0.92 Zm.11653.1.A1_at CF243979 hypothetical protein LOC100191865 - 6e+0 At3g07460 unknown protein O.I. H.G. S.X.
0.60 77.8 0.92 Zm.8357.1.A1_at BM267266 - - 1e-4 At3g62020 GLP10 (GERMIN-LIKE PROTEIN 10) O.I. H.G. S.X.
0.11 5.3 0.89 Zm.11765.1.A1_at CD441156 galactosyltransferase/ transferase, transferring hexosyl groups - 7e-6 At4g21060 galactosyltransferase family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	75.1	0.85	Zm.16508.1.S1_x_at	BE510313	ribosomal protein L39	-	4e-13	At4g31985	60S ribosomal protein L39 (RPL39C)	O.I.	H.G.	S.X.
0.56	74.4	0.81	Zm.9526.1.A1_at	AY110244.1	long-chain-fatty-acid-CoA ligase-like protein	-	2e-3	At3g16170	acyl-activating enzyme 13 (AAE13)	O.I.	H.G.	S.X.
0.55	71.6	0.83	Zm.6342.1.S1_at	AW052791	-	-	2e-13	At1g52540	protein kinase, putative	O.I.	H.G.	S.X.
0.50	65.7	0.83	Zm.10261.1.A1_at	BM501576	-	-	4e-20	At5g62410	SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2)	O.I.	H.G.	S.X.
0.44	55.7	0.81	Zm.9998.1.A1_at	BM335619	-	-	3e-1	At5g57010	calmodulin-binding family protein	O.I.	H.G.	S.X.
0.40	48.5	0.86	Zm.15338.1.A1_at	AI491631	hypothetical protein LOC100194288	-	5e-7	At4g31590	ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5)	O.I.	H.G.	S.X.
0.36	41.3	0.88	Zm.1169.1.A1_at	BM072743	RING finger protein 5	-	2e+0	At3g55460	SCL30	O.I.	H.G.	S.X.
0.32	33.4	0.79	Zm.17285.1.S1_x_at	CK369332	hypothetical protein LOC100272329	-	4e+0	At1g20890	unknown protein	O.I.	H.G.	S.X.
0.31	31.6	0.79	Zm.19239.1.A1_at	CO529234	hypothetical protein LOC100191783	-	2e+0	At1g72310	ATL3	O.I.	H.G.	S.X.
0.31	31.6	0.88	ZmAffx.807.1.S1_at	AI770389	-	-	3e+0	At1g65650	UCH2	O.I.	H.G.	S.X.
0.30	29.8	0.81	Zm.1186.1.S1_at	CF060692	DNA-directed RNA polymerase II 19 kDa polypeptide	-	2e-16	At5g59180	NRPB7	O.I.	H.G.	S.X.
0.30	29.8	0.85	Zm.13546.1.S1_at	AY108255.1	protein SPATULA	-	3e-17	At1g59640	ZCW32	O.I.	H.G.	S.X.
0.30	29.8	0.86	Zm.11827.1.A1_at	BM381077	hypothetical protein LOC100192043	-	4e+0	At3g55820	-	O.I.	H.G.	S.X.
0.29	28.1	0.87	Zm.8795.1.A1_at	BM337357	-	-	5e+0	At5g66550	Maf family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.2 98.6 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3 98.4 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0 98.4 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4 97.8 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5 97.5 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4 97.5 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0 97.3 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9 97.3 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4 97.0 GSM253277 ZM_8d_SG200_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
5.3 96.9 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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