Co-expression analysis

Gene ID	Zm.7685.3.A1_a_at
Gene name
Homology with Arabidopsis	Similar to At4g27810: unknown protein (HF=4e+0)
Module size	6 genes
NF	0.44
%ile	53.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	71.6	0.89	Zm.7685.3.A1_a_at	BM268156	-	-	4e+0	At4g27810	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.91	Zm.14983.2.A1_at	AY109416.1	-	-	3e-5	At5g27150	NHX1 (NA+/H+ EXCHANGER)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.92	Zm.16779.1.A1_at	CF626512	hypothetical protein LOC100216924	-	2e-3	At5g48810	CB5-D (CYTOCHROME B5 ISOFORM D)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.92	Zm.11653.1.A1_at	CF243979	hypothetical protein LOC100191865	-	6e+0	At3g07460	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.92	Zm.8357.1.A1_at	BM267266	-	-	1e-4	At3g62020	GLP10 (GERMIN-LIKE PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.89	Zm.11765.1.A1_at	CD441156	galactosyltransferase/ transferase, transferring hexosyl groups	-	7e-6	At4g21060	galactosyltransferase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.2	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM253277	ZM_8d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
5.3	96.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1614195_at, orthologous to the query gene, Zm.7685.3.A1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.9	1614195_at	At4g27810	similar to peroxisomal targeting signal 1 receptor; PTS1 receptor; Pex5p	-	1e+0	At2g18270	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1611919_at	At4g27810	hypothetical protein LOC100246780	-	4e-14	At5g01990	auxin efflux carrier family protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1612618_at	At4g27810	-	-	3e-7	At3g48030	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	1608688_s_at	At4g27810	hypothetical protein LOC100261500	-	7e-29	At4g22990	SPX (SYG1/Pho81/XPR1) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	1620214_at	At4g27810	hypothetical protein LOC100252624	-	1e+0	At5g39950	ATTRX2 (THIOREDOXIN 2)	O.I.	H.G.	S.X.	Please select
0.36	50.7	1610656_s_at	At4g27810	hypothetical protein LOC100257829	-	2e-1	At1g09932	phosphoglycerate/bisphosphoglycerate mutase-related	O.I.	H.G.	S.X.	Please select
0.35	48.5	1609421_at	At4g27810	hypothetical protein LOC100254643	-	9e-23	At4g28220	NDB1 (NAD(P)H dehydrogenase B1)	O.I.	H.G.	S.X.	Please select
0.34	46.8	1612897_at	At4g27810	hypothetical protein LOC100243707	-	1e+0	At3g02960	copper-binding protein-related	O.I.	H.G.	S.X.	Please select
0.33	45.7	1619511_at	At4g27810	small basic intrinsic protein 1	-	2e-4	At5g18290	SIP1	O.I.	H.G.	S.X.	Please select
0.33	45.7	1619649_at	At4g27810	hypothetical protein LOC100259453	-	1e+0	At2g34860	EDA3 (embryo sac development arrest 3)	O.I.	H.G.	S.X.	Please select
0.32	43.1	1615389_at	At4g27810	hypothetical protein LOC100259260	-	8e+0	At5g21125	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	1622091_at	At4g27810	hypothetical protein LOC100242189	-	4e+0	At2g01360	-	O.I.	H.G.	S.X.	Please select
0.31	41.3	1615989_at	At4g27810	hypothetical protein LOC100255339	-	2e-21	At2g37160	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	1614210_at	At4g27810	hypothetical protein LOC100250962	-	2e-11	At2g25570	binding	O.I.	H.G.	S.X.	Please select
0.31	41.3	1611591_at	At4g27810	hypothetical protein LOC100241221	-	4e-3	At1g80310	sulfate transmembrane transporter	O.I.	H.G.	S.X.	Please select
0.29	37.7	1620535_at	At4g27810	hypothetical protein LOC100261174	-	5e-29	At2g31810	acetolactate synthase small subunit, putative	O.I.	H.G.	S.X.	Please select
0.29	37.7	1610869_at	At4g27810	hypothetical protein LOC100266461	-	4e-105	At5g08530	CI51 (51 kDa subunit of complex I)	O.I.	H.G.	S.X.	Please select
0.28	37.7	1612125_at	At4g27810	hypothetical protein LOC100255999	-	3e-17	At2g04650	ADP-glucose pyrophosphorylase family protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	1615222_at	At4g27810	hypothetical protein LOC100246715	-	6e-13	At1g80940	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	1619114_at	At4g27810	hypothetical protein LOC100254188	-	1e-31	At1g10950	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.27	34.0	1612652_at	At4g27810	hypothetical protein LOC100259899	-	4e-10	At2g33585	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	1609032_at	At4g27810	hypothetical protein LOC100257935	-	3e+0	At4g14520	DNA-directed RNA polymerase II-related	O.I.	H.G.	S.X.	Please select
0.25	30.5	1612896_at	At4g27810	hypothetical protein LOC100264259	-	1e+0	At5g42470	-	O.I.	H.G.	S.X.	Please select
0.25	30.5	1617868_at	At4g27810	hypothetical protein LOC100252587	-	1e+0	At3g03870	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	1616609_at	At4g27810	hypothetical protein LOC100247612	-	4e-7	At5g42850	-	O.I.	H.G.	S.X.	Please select
0.24	28.7	1610819_at	At4g27810	hypothetical protein LOC100248631	-	2e-2	At1g53000	cytidylyltransferase family	O.I.	H.G.	S.X.	Please select
0.21	24.0	1616408_a_at	At4g27810	hypothetical protein LOC100251641	-	2e+0	At2g14935	LCR40 (Low-molecular-weight cysteine-rich 40)	O.I.	H.G.	S.X.	Please select
0.21	24.0	1609368_s_at	At4g27810	hypothetical protein LOC100246319	-	3e-1	At3g24506	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	1611929_at	At4g27810	hypothetical protein LOC100249416	-	4e-17	At1g65660	SMP1 (SWELLMAP 1)	O.I.	H.G.	S.X.	Please select
0.21	24.0	1621023_at	At4g27810	hypothetical protein LOC100258618	-	8e-27	At5g59140	SKP1 family protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1612051_at	At4g27810	hypothetical protein LOC100256212	-	2e-27	At1g09330	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	1620957_at	At4g27810	hypothetical protein LOC100244062	-	8e-21	At2g43400	ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase)	O.I.	H.G.	S.X.	Please select
0.19	20.9	1611704_at	At4g27810	hypothetical protein LOC100244194	-	2e-171	At2g20140	26S protease regulatory complex subunit 4, putative	O.I.	H.G.	S.X.	Please select
0.19	20.9	1614921_at	At4g27810	hypothetical protein LOC100267097	-	4e+0	At4g33960	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	1612487_at	At4g27810	hypothetical protein LOC100247157	-	6e-1	At2g39060	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	1609075_at	At4g27810	hypothetical protein LOC100242672	-	1e-14	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	O.I.	H.G.	S.X.	Please select
0.18	19.4	1621845_s_at	At4g27810	hypothetical protein LOC100261121	-	1e-13	At4g29350	PFN2 (PROFILIN 2)	O.I.	H.G.	S.X.	Please select
0.16	16.7	1615056_at	At4g27810	hypothetical protein LOC100258670	-	3e-16	At5g05520	outer membrane OMP85 family protein	O.I.	H.G.	S.X.	Please select
0.16	16.7	1620630_at	At4g27810	hypothetical protein LOC100244437	-	6e-3	At3g11780	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	1610019_at	At4g27810	hypothetical protein LOC100250847	-	2e-1	At4g09800	RPS18C (S18 RIBOSOMAL PROTEIN)	O.I.	H.G.	S.X.	Please select
0.15	15.6	1611513_s_at	At4g27810	hypothetical protein LOC100262157	-	2e-1	At3g49950	scarecrow transcription factor family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	1620025_at	At4g27810	hypothetical protein LOC100249310	-	5e-87	At5g08290	YLS8	O.I.	H.G.	S.X.	Please select
0.13	13.3	1614753_at	At4g27810	hypothetical protein LOC100241307	-	2e-4	At2g43090	aconitase C-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	1613587_at	At4g27810	hypothetical protein LOC100259893	-	1e-33	At5g57330	aldose 1-epimerase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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