Co-expression analysis

Gene ID Zm.7671.1.A1_at
Gene name hypothetical protein LOC100272470
Homology with ArabidopsisSimilar to At4g00232: unknown protein (HF=8e-2)
Module size 6 genes
NF 0.66
%ile 87.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.80.97Zm.7671.1.A1_atBM073122hypothetical protein LOC100272470-8e-2At4g00232unknown proteinO.I.H.G.S.X.
0.6785.80.97Zm.13185.1.A1_atAY104045.1--1e-22At3g13060-O.I.H.G.S.X.
0.6179.50.97Zm.9311.1.A1_a_atBG842505hypothetical protein LOC100274965-5e+0At2g29180unknown proteinO.I.H.G.S.X.
0.6179.50.97Zm.11636.1.A1_atBM379473--4e+0At5g07160DNA binding / transcription factorO.I.H.G.S.X.
0.5571.60.97Zm.7541.1.A1_atBM341407hypothetical protein LOC100192095-6e+0At3g43110unknown proteinO.I.H.G.S.X.
0.5065.70.97Zm.7938.1.A1_atBM079591glycosyltransferase-7e+0At5g42567-O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.80.96Zm.2283.1.A1_atBF728022ras-related protein Rab11C-1e-10At3g46830ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C)O.I.H.G.S.X.
0.5571.60.94Zm.501.1.S1_atU43034.2permease 1-3e-1At1g65550xanthine/uracil permease family proteinO.I.H.G.S.X.
0.5571.60.96Zm.17968.1.A1_atCK827143--2e+0At5g0296040S ribosomal protein S23 (RPS23B)O.I.H.G.S.X.
0.5065.70.95Zm.18368.1.S1_atCO520081hypothetical protein LOC100273773-6e-1At3g06890unknown proteinO.I.H.G.S.X.
0.5065.70.96Zm.7908.1.A1_atBM080382--1e+0At3g10020unknown proteinO.I.H.G.S.X.
0.5065.70.96Zm.3302.1.A1_atAY110608.1hypothetical protein LOC100276576-5e-1At5g04150BHLH101O.I.H.G.S.X.
0.5065.70.96Zm.6377.2.A1_a_atAI691626growth-regulating factor 10-like-1e+0At2g36400AtGRF3 (GROWTH-REGULATING FACTOR 3)O.I.H.G.S.X.
0.4759.90.95Zm.18062.1.A1_atCO526041hypothetical protein LOC100192968-2e-6At1g50590pirin, putativeO.I.H.G.S.X.
0.4759.90.96Zm.14054.1.S1_atAY104122.1hypothetical protein LOC100279504-8e-4At5g62290nucleotide-sensitive chloride conductance regulator (ICln) family proteinO.I.H.G.S.X.
0.4455.70.95Zm.13857.1.S1_atAF439726.1methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase-3e-13At3g12290tetrahydrofolate dehydrogenase/cyclohydrolase, putativeO.I.H.G.S.X.
0.4455.70.95Zm.10817.7.S1_s_atAI676907--3e+0At4g21040Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.4455.70.96Zm.7364.1.A1_atBM078096--2e+0At5g25750unknown proteinO.I.H.G.S.X.
0.4352.80.96Zm.5565.1.S1_atD45402.1cysteine protease1-9e-11At4g39090RD19 (RESPONSIVE TO DEHYDRATION 19)O.I.H.G.S.X.
0.4048.50.96Zm.17395.1.A1_atCK347732hypothetical protein LOC100191730-5e+0At2g22920serine carboxypeptidase S10 family proteinO.I.H.G.S.X.
0.3844.20.94Zm.3665.1.S1_atD88451.1aldehyde oxidase-4e-2At3g43600AAO2 (ALDEHYDE OXIDASE 2)O.I.H.G.S.X.
0.3844.20.97Zm.4304.1.S1_atAI834719--1e-3At3g18600DEAD/DEAH box helicase, putativeO.I.H.G.S.X.
0.3742.30.95Zm.8216.1.A1_atCA400212hypothetical protein LOC100280365-3e-8At1g25350OVA9 (ovule abortion 9)O.I.H.G.S.X.
0.3641.30.97Zm.3497.1.A1_atCF021745hypothetical protein LOC100272844-7e-31At4g31870ATGPX7 (glutathione peroxidase 7)O.I.H.G.S.X.
0.3538.90.95Zm.8121.1.A1_atCF630483hypothetical protein LOC100276169-3e-2At1g63780IMP4O.I.H.G.S.X.
0.3336.00.94Zm.15417.1.A1_atAY110018.1--7e-97At1g08750GPI-anchor transamidase, putativeO.I.H.G.S.X.
0.3336.00.94ZmAffx.1002.1.A1_atAI881341--2e-1At1g04445zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.3336.00.95Zm.990.1.A1_atCF636054--1e+1At5g44345F-box family protein-relatedO.I.H.G.S.X.
0.3336.00.96Zm.6331.1.S1_atCO523745--6e-118At1g70490ARFA1DO.I.H.G.S.X.
0.3336.00.96Zm.11629.1.A1_atBM379422hypothetical protein LOC100272434-3e-1At4g18620-O.I.H.G.S.X.
0.3336.00.96Zm.19328.1.A1_atCO528598hypothetical protein LOC100273799-1e-2At5g22310unknown proteinO.I.H.G.S.X.
0.3336.00.97Zm.17166.1.A1_atCK370745--4e+0At5g65730xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeO.I.H.G.S.X.
0.3233.40.95Zm.1013.2.A1_atCK347213nucleic acid binding protein-4e-1At4g21450vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.3233.40.96Zm.400.2.S1_atAI677573Pyruvate dehydrogenase (lipoamide) kinase1-3e-28At3g06483PDK (PYRUVATE DEHYDROGENASE KINASE)O.I.H.G.S.X.
0.3233.40.97Zm.3084.1.A1_atCA404291hypothetical protein LOC100216830-9e-1At5g56600PRF3 (PROFILIN 3)O.I.H.G.S.X.
0.3131.60.96Zm.13856.1.S1_atAF439727.1formate tetrahyrofolate ligase-9e-58At1g50480THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE)O.I.H.G.S.X.
0.2928.10.94Zm.5538.1.A1_atAY108866.1hypothetical protein LOC100272706-2e-1At2g34070unknown proteinO.I.H.G.S.X.
0.2828.10.96Zm.13853.1.S1_atAF272753.1kinesin heavy chain-1e-14At1g63640kinesin motor protein-relatedO.I.H.G.S.X.
0.2724.60.94Zm.146.1.S1_atU10076.1cyclin3-1e-2At1g76310CYCB2O.I.H.G.S.X.
0.2724.60.94Zm.885.1.S1_atBM080781hypothetical protein LOC100193933-3e-15At4g19640ARA7O.I.H.G.S.X.
0.2521.30.93Zm.13814.1.S1_atAY104654.1hypothetical protein LOC100273186-1e-5At1g08940phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.
0.2521.30.94Zm.12082.2.A1_x_atCF636676hypothetical protein LOC100278326-4e+0At4g21216unknown proteinO.I.H.G.S.X.
0.2521.30.95Zm.19285.1.A1_atAI947967hypothetical protein LOC100273235-5e+0At4g25080CHLM (magnesium-protoporphyrin IX methyltransferase)O.I.H.G.S.X.
0.2521.30.96Zm.5785.3.A1_atBG873797hypothetical protein LOC100191838-3e-123At1g02500SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1)O.I.H.G.S.X.
0.2521.30.96Zm.3892.18.S1_a_atAI746067Elongation factor 1 alpha-2e-6At1g35550elongation factor Tu C-terminal domain-containing proteinO.I.H.G.S.X.
0.2521.30.97Zm.13199.1.S1_atCA404238hypothetical protein LOC100191826-2e-7At3g17465RPL3P (RIBOSOMAL PROTEIN L3 PLASTID)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.198.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.998.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.598.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.398.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.498.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.698.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.698.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.498.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.298.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.993.8GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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