Co-expression analysis

Gene ID	Zm.7611.2.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g49400: emb1129 (embryo defective 1129) (HF=2e-3)
Module size	7 genes
NF	0.52
%ile	67.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.97	Zm.7611.2.A1_at	BM268818	-	-	2e-3	At1g49400	emb1129 (embryo defective 1129)	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.97	Zm.4335.3.A1_at	AY109325.1	-	-	1e-3	At2g24050	MIF4G domain-containing protein / MA3 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.15852.2.A1_at	AY108720.1	-	-	1e-41	At5g03430	phosphoadenosine phosphosulfate (PAPS) reductase family protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.2716.1.A1_at	CD440659	-	-	3e+0	At4g28700	AMT1	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.15678.1.A1_at	CD440195	hypothetical protein LOC100192926	-	7e+0	At4g18280	glycine-rich cell wall protein-related	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.6644.2.A1_at	AY109212.1	-	-	4e+0	At5g42050	-	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.13871.1.A1_at	AF099434.1	R2R3MYB-domain protein	-	2e-5	At1g08810	MYB60 (myb domain protein 60)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.2	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage