Co-expression analysis

Gene ID Zm.7598.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g40510: 40S ribosomal protein S26 (RPS26A) (HF=3e-3)
Module size 6 genes
NF 0.61
%ile 82.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.98Zm.7598.1.A1_atCF629653--3e-3At2g4051040S ribosomal protein S26 (RPS26A)O.I.H.G.S.X.
0.6077.80.98Zm.5305.1.A1_atCK370425ribonucleoprotein A-6e-4At2g3722029 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putativeO.I.H.G.S.X.
0.5571.60.98Zm.3303.2.A1_atCO527646lipoxygenase-3e+0At3g22400LOX5O.I.H.G.S.X.
0.5571.60.98Zm.768.1.A1_atBG355197--3e+0At2g27750nucleolar matrix protein-relatedO.I.H.G.S.X.
0.5065.70.98Zm.4283.2.S1_atAY109824.1--4e-26At2g40290eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putativeO.I.H.G.S.X.
0.3844.20.98Zm.3169.2.S1_atCA404972hypothetical protein LOC100279753-4e-53At5g44635minichromosome maintenance family protein / MCM family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6077.80.97Zm.5268.1.S1_atCF626642--1e-5At1g58280-O.I.H.G.S.X.
0.6077.80.98Zm.4728.1.A1_atAI855200--2e+0At4g10850nodulin MtN3 family proteinO.I.H.G.S.X.
0.6077.80.98Zm.6715.1.A1_atAY104238.1--1e-3At5g22920zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6077.80.98Zm.5570.1.A1_atCF646219hypothetical protein LOC100191759-2e-4At4g24890PAP24 (PURPLE ACID PHOSPHATASE 24)O.I.H.G.S.X.
0.5674.40.98Zm.1011.1.S1_atBM073180hypothetical protein LOC100192700-3e+0At1g35242unknown proteinO.I.H.G.S.X.
0.5674.40.98Zm.155.2.S1_atAY109498.1--4e-3At4g32400SHS1 (SODIUM HYPERSENSITIVE 1)O.I.H.G.S.X.
0.5571.60.98Zm.6715.1.S1_a_atAY104238.1RING finger and CHY zinc finger domain-containing protein 1-2e-5At5g25560zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5369.10.97Zm.17569.1.S1_atCD446312hydroxymethylglutaryl-CoA synthase-8e-16At4g11820MVA1O.I.H.G.S.X.
0.5065.70.98Zm.11393.1.A1_atCF629966hypothetical protein LOC100279372-2e-13At2g27100SE (SERRATE)O.I.H.G.S.X.
0.5065.70.98Zm.3162.1.A1_atBM340731hypothetical protein LOC100279366-3e-8At4g33640unknown proteinO.I.H.G.S.X.
0.5065.70.98Zm.5139.1.S1_atAI62275640S ribosomal protein SA-8e-19At3g04770RPSAb (40S ribosomal protein SA B)O.I.H.G.S.X.
0.4759.90.97Zm.14513.2.A1_atBM380808hypothetical protein LOC100272299-2e-43At1g09200histone H3O.I.H.G.S.X.
0.4658.40.97Zm.6384.1.A1_atAY105805.1--2e+0At3g25010AtRLP41 (Receptor Like Protein 41)O.I.H.G.S.X.
0.4658.40.98Zm.6946.2.A1_atCO528668Hypothetical protein LOC100191975-3e-6At1g11680CYP51G1 (CYTOCHROME P450 51G1)O.I.H.G.S.X.
0.4455.70.98Zm.19118.1.A1_atCO522834hypothetical protein LOC100274224-6e+0At5g10130pollen Ole e 1 allergen and extensin family proteinO.I.H.G.S.X.
0.4455.70.98Zm.4377.2.A1_a_atAI714705hypothetical protein LOC100193789 /// ubiquitin-conjugating enzyme E2 J2-2e-4At1g17280UBC34 (ubiquitin-conjugating enzyme 34)O.I.H.G.S.X.
0.4251.30.97Zm.5539.1.A1_atBG842565hypothetical protein LOC100276652-5e+0At5g03090unknown proteinO.I.H.G.S.X.
0.4048.50.97Zm.18305.1.A1_atCO533683Isocitrate lyase-1e-9At3g21720ICL (ISOCITRATE LYASE)O.I.H.G.S.X.
0.4048.50.97Zm.13578.1.A1_atAY107890.1--5e+0At5g47740-O.I.H.G.S.X.
0.4048.50.97Zm.7078.1.S1_atCD447894acyl carrier protein-6e-3At4g25050ACP4 (acyl carrier protein 4)O.I.H.G.S.X.
0.4048.50.98Zm.18267.1.A1_atAY222838.1--2e+0At5g59845gibberellin-regulated family proteinO.I.H.G.S.X.
0.4048.50.98Zm.17484.1.A1_atCK394771hypothetical protein LOC100191396-1e+0At3g15250unknown proteinO.I.H.G.S.X.
0.4048.50.98Zm.2157.8.S1_atBI096578Hypothetical protein LOC100193584-8e-1At3g66654peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinO.I.H.G.S.X.
0.4048.50.98Zm.12321.1.S1_atBI245236hypothetical protein LOC100278717-5e-1At5g60660PIP2O.I.H.G.S.X.
0.4048.50.98Zm.62.1.S1_atX55314.1anthocyaninless2-6e+0At4g28050TET7 (TETRASPANIN7)O.I.H.G.S.X.
0.3641.30.97Zm.5523.1.A1_atBG842332hypothetical protein LOC100274060-2e-7At5g17410tubulin family proteinO.I.H.G.S.X.
0.3641.30.98Zm.6558.1.S1_atAF073329.1eukaryotic initiation factor3-1e-10At4g11420EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A)O.I.H.G.S.X.
0.3641.30.98Zm.6594.1.A1_atCF972362hypothetical protein LOC100193029-1e-3At5g23950C2 domain-containing proteinO.I.H.G.S.X.
0.3538.90.96Zm.7094.1.A1_x_atAW05422360S ribosomal protein L7a-5e-69At3g6287060S ribosomal protein L7A (RPL7aB)O.I.H.G.S.X.
0.3538.90.98Zm.13493.1.S1_atCA398644Grx_S15.1 - glutaredoxin subgroup II-2e-3At3g15660GRX4 (GLUTAREDOXIN 4)O.I.H.G.S.X.
0.3538.90.98Zm.3318.1.S1_atU17225.1phosphohexose isomerase1-1e-56At5g42740glucose-6-phosphate isomerase, cytosolic (PGIC)O.I.H.G.S.X.
0.3336.00.97Zm.10181.1.A1_atBM380185--5e+0At4g16750DRE-binding transcription factor, putativeO.I.H.G.S.X.
0.3336.00.97Zm.19077.1.A1_atCO526103--7e+0At3g43722unknown proteinO.I.H.G.S.X.
0.3233.40.98Zm.12326.1.S1_atBQ703243hypothetical protein LOC100278585-8e-2At3g56910PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)O.I.H.G.S.X.
0.3233.40.98Zm.7010.3.S1_atAI691447--5e-2At2g32100OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)O.I.H.G.S.X.
0.3131.60.97Zm.4793.1.S1_a_atCF041967hypothetical protein LOC100193376-9e-5At3g10860ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putativeO.I.H.G.S.X.
0.3131.60.98Zm.3844.1.S1_atAY331720.1group 3 pollen allergen-2e+0At4g14270-O.I.H.G.S.X.
0.3029.80.97Zm.4324.1.A1_atCO524609hypothetical protein LOC100191178-2e-1At4g16220hydrolase, acting on ester bondsO.I.H.G.S.X.
0.2928.10.96Zm.17476.1.S1_atCK368011transcription factor MYB8-2e-9At5g61420MYB28 (myb domain protein 28)O.I.H.G.S.X.
0.2928.10.97Zm.17195.1.S1_atCK144512--1e+1At5g45680FK506-binding protein 1 (FKBP13)O.I.H.G.S.X.
0.2928.10.97Zm.6891.1.S1_atAI065574--9e-1At2g43050ATPMEPCRDO.I.H.G.S.X.
0.2928.10.98Zm.3773.1.S1_atAY110209.1hypothetical protein LOC100193094-4e+0At4g18620-O.I.H.G.S.X.
0.2928.10.98Zm.5799.1.A1_atAI649714gamma-tocopherol methyltransferase-8e-13At1g64970G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)O.I.H.G.S.X.
0.2928.10.98Zm.12150.2.S1_atAI619383hypothetical protein LOC100273319-9e-1At4g31340myosin heavy chain-relatedO.I.H.G.S.X.
0.2828.10.96Zm.16467.1.A1_atAF269064.1restorer of fertility2-1e-49At1g23800ALDH2B7O.I.H.G.S.X.
0.2724.60.97Zm.2732.1.A1_atAW067014hypothetical protein LOC100275163-1e+0At1g67856protein binding / zinc ion bindingO.I.H.G.S.X.
0.2724.60.97Zm.3186.1.S1_a_atCK827152hypothetical protein LOC100279311-4e-4At5g16070chaperonin, putativeO.I.H.G.S.X.
0.2724.60.98Zm.7644.2.S1_x_atBM341428--4e+0At5g23760heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.2724.60.97Zm.9282.1.A1_atBM268851WRKY74 - superfamily of TFs having WRKY and zinc finger domains-5e+0At3g04770RPSAb (40S ribosomal protein SA B)O.I.H.G.S.X.
0.2724.60.98Zm.5988.1.A1_atAI666062legume lectins beta domain containing protein-8e-1At5g48350nucleic acid bindingO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.799.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.599.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.199.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.198.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.598.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.698.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.298.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.698.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.198.4GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.294.5GSM202298B73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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