Co-expression analysis

Gene ID	Zm.7598.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g40510: 40S ribosomal protein S26 (RPS26A) (HF=3e-3)
Module size	6 genes
NF	0.61
%ile	82.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.7598.1.A1_at	CF629653	-	-	3e-3	At2g40510	40S ribosomal protein S26 (RPS26A)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.5305.1.A1_at	CK370425	ribonucleoprotein A	-	6e-4	At2g37220	29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.3303.2.A1_at	CO527646	lipoxygenase	-	3e+0	At3g22400	LOX5	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.768.1.A1_at	BG355197	-	-	3e+0	At2g27750	nucleolar matrix protein-related	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.4283.2.S1_at	AY109824.1	-	-	4e-26	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.98	Zm.3169.2.S1_at	CA404972	hypothetical protein LOC100279753	-	4e-53	At5g44635	minichromosome maintenance family protein / MCM family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.7	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.5	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the barley gene, HVSMEb0007D15r2_at, orthologous to the query gene, Zm.7598.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	HVSMEb0007D15r2_at	At2g40510	-	-	2e-1	At4g15120	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig17779_at	At2g40510	-	-	2e-2	At5g41680	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	Contig11507_at	At2g40510	-	-	7e-22	At5g19420	Ran GTPase binding / chromatin binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.05	4.1	Contig7242_at	At2g40510	-	-	1e-6	At1g49960	xanthine/uracil permease family protein	O.I.	H.G.	S.X.	Please select
0.04	3.4	HA01F07u_at	At2g40510	-	-	3e-38	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.02	1.8	rbags25e03_at	At2g40510	-	-	3e+0	At3g26070	plastid-lipid associated protein PAP / fibrillin family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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