CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.7598.1.A1_at

Gene name
Homology with Arabidopsis Similar to At2g40510: 40S ribosomal protein S26 (RPS26A) (HF=3e-3)

Module size 6 genes

NF 0.61

%ile 82.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.98 Zm.7598.1.A1_at CF629653 - - 3e-3 At2g40510 40S ribosomal protein S26 (RPS26A) O.I. H.G. S.X.
0.60 77.8 0.98 Zm.5305.1.A1_at CK370425 ribonucleoprotein A - 6e-4 At2g37220 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative O.I. H.G. S.X.
0.55 71.6 0.98 Zm.3303.2.A1_at CO527646 lipoxygenase - 3e+0 At3g22400 LOX5 O.I. H.G. S.X.
0.55 71.6 0.98 Zm.768.1.A1_at BG355197 - - 3e+0 At2g27750 nucleolar matrix protein-related O.I. H.G. S.X.
0.50 65.7 0.98 Zm.4283.2.S1_at AY109824.1 - - 4e-26 At2g40290 eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative O.I. H.G. S.X.
0.38 44.2 0.98 Zm.3169.2.S1_at CA404972 hypothetical protein LOC100279753 - 4e-53 At5g44635 minichromosome maintenance family protein / MCM family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.7 99.1 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.5 99.1 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1 99.0 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1 98.9 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5 98.9 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6 98.8 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2 98.8 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6 98.4 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1 98.4 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2 94.5 GSM202298 B73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g40510, orthologous to the query gene, Zm.7598.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At2g40510 818646 40S ribosomal protein S26 (RPS26A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, ribosome, chloroplast;MFOPA O.I. H.G. S.X.
0.57 73.8 At4g15000 827159 60S ribosomal protein L27 (RPL27C) F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, intracellular;MOFP O.I. H.G. S.X.
0.42 53.9 At5g09510 830810 40S ribosomal protein S15 (RPS15D) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, plasma membrane;BOPMAF O.I. H.G. S.X.
0.40 50.8 At3g22230 821787 60S ribosomal protein L27 (RPL27B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome;MOFP O.I. H.G. S.X.
0.22 17.5 At1g26880 838331 60S ribosomal protein L34 (RPL34A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, nucleolus, chloroplast;MOPFA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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