Co-expression analysis

Gene ID	Zm.7579.1.A1_at
Gene name	hypothetical protein LOC100276241
Homology with Arabidopsis	Similar to At4g29020: glycine-rich protein (HF=3e+0)
Module size	20 genes
NF	0.31
%ile	29.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.92	Zm.7579.1.A1_at	CO520294	hypothetical protein LOC100276241	-	3e+0	At4g29020	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.94	Zm.10058.1.A1_at	BM378675	hypothetical protein LOC100192027	-	2e+0	At3g27160	GHS1 (GLUCOSE HYPERSENSITIVE 1)	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.93	ZmAffx.1107.1.A1_at	AW216314	-	-	8e-1	At3g19860	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.96	Zm.349.1.A1_at	CF060508	hypothetical protein LOC100273805 /// 60S acidic ribosomal protein P1	-	3e-5	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.95	Zm.6721.3.A1_at	CF016153	Histone H4	-	5e-29	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.95	Zm.5844.1.A1_at	AI649858	-	-	9e-1	At1g56030	MIF4G domain-containing protein / U-box domain-containing protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.96	Zm.8758.1.A1_at	BM337189	-	-	6e+0	At1g26260	CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5)	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.96	Zm.3380.1.A1_at	BM382736	hypothetical protein LOC100192837	-	7e+0	At5g10300	MES5 (METHYL ESTERASE 5)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.96	Zm.8593.1.A1_at	BM341502	cystathionin beta synthase protein	-	2e-6	At4g36910	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.95	Zm.5851.15.A1_at	AI759130	-	-	9e-1	At2g04031	-	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.96	Zm.7535.1.A1_at	AY105427.1	cellular retinaldehyde-binding/triple function, C-terminal	-	8e+0	At5g03204	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.96	Zm.14638.1.A1_at	BM335183	-	-	9e-1	At2g28060	protein kinase-related	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.95	Zm.9599.1.A1_at	BM333574	-	-	2e-1	At1g27330	-	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.96	Zm.15896.1.A1_at	AY103971.1	-	-	4e-16	At4g32010	HSL1 (HSI2-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.94	Zm.2277.1.S1_at	CF015271	zinc finger, C3HC4 type family protein	-	6e+0	At5g20650	COPT5	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.95	Zm.548.1.S1_at	AF244684.1	glutathione transferase19	-	1e-1	At1g10370	ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.96	Zm.5861.1.A1_at	CD437163	hypothetical protein LOC100272371	-	5e-67	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.95	Zm.3755.1.A1_at	AY104091.1	derlin2-2	-	8e-13	At4g21810	DER2.1 (DERLIN-2.1)	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.95	Zm.7333.1.A1_at	BG268640	kinesin heavy chain	-	2e-9	At3g20150	kinesin motor family protein	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.96	Zm.5721.1.A1_a_at	AY105083.1	Hypothetical protein LOC100191423	-	9e-2	At4g12460	ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.1	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.5	97.5	GSM206297	Lower pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.1	97.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM206309	Lower pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.1	96.8	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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