Co-expression analysis

Gene ID	Zm.7543.1.A1_at
Gene name	hypothetical protein LOC100192002
Homology with Arabidopsis	Similar to At1g66530: arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative (HF=4e-6)
Module size	6 genes
NF	0.53
%ile	68.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.92	Zm.7543.1.A1_at	CD997722	hypothetical protein LOC100192002	-	4e-6	At1g66530	arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.93	Zm.10170.2.S1_at	BM078288	Hypothetical protein LOC100194222	-	3e-14	At5g56140	KH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.95	Zm.2321.3.A1_a_at	BG841291	hypothetical protein LOC100191581 /// hypothetical protein LOC100274569	-	3e-9	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.93	Zm.9031.1.S1_at	CD441372	chloroplast Cu-Zn superoxide dismutase	-	8e-37	At2g28190	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.92	Zm.7544.1.A1_at	BM334017	mRNA	-	3e-2	At3g20650	mRNA capping enzyme family protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.94	Zm.4027.2.A1_at	CO527250	hypothetical protein LOC100272558	-	6e-1	At1g49600	ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	97.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
3.9	95.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.6	95.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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