Co-expression analysis

Gene ID	Zm.7541.1.A1_at
Gene name	hypothetical protein LOC100192095
Homology with Arabidopsis	Similar to At3g43110: unknown protein (HF=6e+0)
Module size	6 genes
NF	0.58
%ile	76.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.97	Zm.7541.1.A1_at	BM341407	hypothetical protein LOC100192095	-	6e+0	At3g43110	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.97	Zm.11636.1.A1_at	BM379473	-	-	4e+0	At5g07160	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.7938.1.A1_at	BM079591	glycosyltransferase	-	7e+0	At5g42567	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.4304.1.S1_at	AI834719	-	-	1e-3	At3g18600	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.9311.1.A1_a_at	BG842505	hypothetical protein LOC100274965	-	5e+0	At2g29180	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.13853.1.S1_at	AF272753.1	kinesin heavy chain	-	1e-14	At1g63640	kinesin motor protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.4	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the grape gene, 1615231_at, orthologous to the query gene, Zm.7541.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.6	1615231_at	At3g43110	hypothetical protein LOC100254995	-	1e-19	At2g31680	AtRABA5d (Arabidopsis Rab GTPase homolog A5d)	O.I.	H.G.	S.X.	Please select
0.36	50.7	1617454_at	At3g43110	hypothetical protein LOC100261773	-	3e+0	At3g10700	GHMP kinase family protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	1608523_at	At3g43110	hypothetical protein LOC100253981	-	4e+0	At5g14340	AtMYB40 (myb domain protein 40)	O.I.	H.G.	S.X.	Please select
0.04	5.2	1610794_at	At3g43110	hypothetical protein LOC100254003	-	2e-46	At1g20330	SMT2 (STEROL METHYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.03	4.2	1607962_at	At3g43110	similar to pentatricopeptide repeat-containing protein At1g32415	-	7e-12	At1g32410	vacuolar protein sorting 55 family protein / VPS55 family protein	O.I.	H.G.	S.X.	Please select
0.02	3.2	1606799_s_at	At3g43110	hypothetical protein LOC100253273 /// hypothetical protein LOC100248145	-	4e-101	At1g04410	malate dehydrogenase, cytosolic, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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