Co-expression analysis

Gene ID	Zm.7541.1.A1_at
Gene name	hypothetical protein LOC100192095
Homology with Arabidopsis	Similar to At3g43110: unknown protein (HF=6e+0)
Module size	6 genes
NF	0.58
%ile	76.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.97	Zm.7541.1.A1_at	BM341407	hypothetical protein LOC100192095	-	6e+0	At3g43110	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.97	Zm.11636.1.A1_at	BM379473	-	-	4e+0	At5g07160	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.7938.1.A1_at	BM079591	glycosyltransferase	-	7e+0	At5g42567	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.4304.1.S1_at	AI834719	-	-	1e-3	At3g18600	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.9311.1.A1_a_at	BG842505	hypothetical protein LOC100274965	-	5e+0	At2g29180	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.13853.1.S1_at	AF272753.1	kinesin heavy chain	-	1e-14	At1g63640	kinesin motor protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.4	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the wheat gene, Ta.8668.1.S1_at, orthologous to the query gene, Zm.7541.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	94.2	Ta.8668.1.S1_at	At3g43110	-	-	1e-1	At5g22280	unknown protein	O.I.	H.G.	S.X.	Please select
0.66	84.1	Ta.829.1.S1_at	At3g43110	-	-	2e-47	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.55	76.8	Ta.3311.1.S1_at	At3g43110	root hair defective 3 GTP-binding protein	-	1e-28	At1g72960	root hair defective 3 GTP-binding (RHD3) family protein	O.I.	H.G.	S.X.	Please select
0.51	73.0	Ta.7422.2.S1_a_at	At3g43110	-	-	7e-2	At5g20520	WAV2 (WAVY GROWTH 2)	O.I.	H.G.	S.X.	Please select
0.51	73.0	Ta.8309.2.S1_a_at	At3g43110	-	-	2e-2	At2g36680	-	O.I.	H.G.	S.X.	Please select
0.48	69.0	Ta.9540.2.S1_a_at	At3g43110	-	-	1e-9	At2g25310	carbohydrate binding	O.I.	H.G.	S.X.	Please select
0.47	67.9	Ta.7299.1.S1_at	At3g43110	-	-	6e-36	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	O.I.	H.G.	S.X.	Please select
0.47	67.9	Ta.14353.1.S1_at	At3g43110	-	-	5e-4	At5g52200	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.9049.3.S1_a_at	At3g43110	-	-	1e+0	At4g20520	RNA binding / RNA-directed DNA polymerase	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.27777.1.S1_at	At3g43110	-	-	8e-8	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.2228.1.S1_a_at	At3g43110	calmodulin TaCaM2-2 /// calmodulin TaCaM2-3 /// calmodulin TaCaM2-1	-	5e-103	At3g56800	CAM3 (CALMODULIN 3)	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.28673.1.S1_at	At3g43110	Vacuolar ATPase subunit F	-	3e-15	At4g02620	vacuolar ATPase subunit F family protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.22913.1.S1_at	At3g43110	-	-	1e+1	At5g61200	-	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.8971.1.S1_at	At3g43110	-	-	2e-10	At3g12480	NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.1602.1.S1_at	At3g43110	-	-	2e+0	At5g55200	co-chaperone grpE protein, putative	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.7599.1.S1_at	At3g43110	-	-	4e-15	At1g60170	emb1220 (embryo defective 1220)	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.2839.1.S1_at	At3g43110	-	-	8e-4	At4g00026	-	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.959.2.S1_at	At3g43110	-	-	1e+0	At5g16990	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.1892.1.S1_at	At3g43110	Vacuolar ATPase subunit G	-	2e-6	At4g23710	VAG2	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.5857.1.S1_at	At3g43110	-	-	8e-1	At2g17730	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.9637.1.S1_at	At3g43110	-	-	5e-1	At3g53490	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.9232.1.S1_at	At3g43110	coated vesicle membrane protein-like	-	2e-1	At3g07680	emp24/gp25L/p24 family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.2505.1.A1_at	At3g43110	-	-	2e-33	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.2505.1.A1_x_at	At3g43110	-	-	2e-33	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.21149.1.S1_at	At3g43110	-	-	8e-6	At1g02680	TAF13 (TBP-ASSOCIATED FACTOR 13)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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