Co-expression analysis

Gene ID	Zm.7440.1.A1_at
Gene name	hypothetical protein LOC100273378
Homology with Arabidopsis	Similar to At2g14660: unknown protein (HF=5e-1)
Module size	6 genes
NF	0.68
%ile	89.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.89	Zm.7440.1.A1_at	BM380339	hypothetical protein LOC100273378	-	5e-1	At2g14660	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.88	Zm.1030.1.A1_at	AY106168.1	-	-	6e+0	At5g24655	LSU4 (RESPONSE TO LOW SULFUR 4)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.89	Zm.10577.1.A1_at	BQ538417	-	-	5e-1	At5g55630	ATKCO1	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.89	Zm.156.1.A1_at	L06478.1	opaque2 heterodimerizing protein2	-	1e-2	At3g54620	BZIP25 (BASIC LEUCINE ZIPPER 25)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.90	Zm.10347.1.S1_s_at	AF012888.1	Tousled-like kinase 1 /// Tousled-like kinase 2	-	3e-52	At5g20930	TSL (TOUSLED)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.92	Zm.18110.1.S1_at	AY620409.1	arginine/serine-rich splicing factor 2 variant 2 /// arginine/serine-rich splicing factor 2 variant 3	-	3e-8	At3g61860	RSP31	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.3	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage