CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.7370.1.A1_at

Gene name beta-expansin 1a
Homology with Arabidopsis Similar to At1g20220: nucleic acid binding (HF=5e-1)

Module size 6 genes

NF 0.17

%ile 12.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 65.7 0.92 Zm.7370.1.A1_at BM382341 beta-expansin 1a - 5e-1 At1g20220 nucleic acid binding O.I. H.G. S.X.
0.50 65.7 0.91 Zm.11830.1.S1_at CA398394 protein grpE - 2e-3 At5g17710 EMB1241 (embryo defective 1241) O.I. H.G. S.X.
0.44 55.7 0.92 Zm.13584.1.A1_at AY107853.1 - - 1e-72 At1g21640 NADK2 O.I. H.G. S.X.
0.12 5.9 0.91 Zm.14291.1.S1_at BE056944 40S ribosomal protein S30 - 8e-18 At4g29390 40S ribosomal protein S30 (RPS30B) O.I. H.G. S.X.
0.09 4.0 0.92 Zm.19297.1.A1_at CO524882 hypothetical protein LOC100193577 - 2e-2 At3g49800 BSD domain-containing protein O.I. H.G. S.X.
0.06 2.3 0.91 Zm.17352.1.A1_at CF636500 - - 4e+0 At5g53030 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.1 95.9 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0 95.8 GSM253282 ZM_8d_SG200_3Alu_III GSE10023 Maize gene expression during infection with Ustilago maydis
3.9 95.7 GSM253280 ZM_8d_SG200_3Alu_I GSE10023 Maize gene expression during infection with Ustilago maydis
3.8 95.5 GSM253281 ZM_8d_SG200_3Alu_II GSE10023 Maize gene expression during infection with Ustilago maydis
3.5 95.1 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5 95.1 GSM320445 protocol: mRNA - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3 94.7 GSM205422 Mo17xB73 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.3 94.7 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9 93.8 GSM320446 protocol: mRNA - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8 93.5 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, Ta.24120.1.S1_at, orthologous to the query gene, Zm.7370.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 Ta.24120.1.S1_at At1g20220 expansin EXPB7 - 9e+0 At3g56580 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.83 93.4 Ta.23376.2.S1_s_at At1g20220 - - 1e+0 At5g24490 30S ribosomal protein, putative O.I. H.G. S.X.
0.73 89.1 Ta.23376.1.S1_at At1g20220 - - 1e-2 At3g01190 peroxidase 27 (PER27) (P27) (PRXR7) O.I. H.G. S.X.
0.60 81.0 Ta.5346.2.S1_x_at At1g20220 - - 1e-1 At1g28650 lipase, putative O.I. H.G. S.X.
0.36 51.9 Ta.18151.1.S1_x_at At1g20220 - - 2e+0 At1g52615 unknown gene O.I. H.G. S.X.
0.25 32.1 Ta.21220.1.S1_x_at At1g20220 - - 6e-3 At3g42310 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera

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