Co-expression analysis

Gene ID	Zm.7370.1.A1_at
Gene name	beta-expansin 1a
Homology with Arabidopsis	Similar to At1g20220: nucleic acid binding (HF=5e-1)
Module size	6 genes
NF	0.17
%ile	12.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	65.7	0.92	Zm.7370.1.A1_at	BM382341	beta-expansin 1a	-	5e-1	At1g20220	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.91	Zm.11830.1.S1_at	CA398394	protein grpE	-	2e-3	At5g17710	EMB1241 (embryo defective 1241)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.92	Zm.13584.1.A1_at	AY107853.1	-	-	1e-72	At1g21640	NADK2	O.I.	H.G.	S.X.	Please select
0.12	5.9	0.91	Zm.14291.1.S1_at	BE056944	40S ribosomal protein S30	-	8e-18	At4g29390	40S ribosomal protein S30 (RPS30B)	O.I.	H.G.	S.X.	Please select
0.09	4.0	0.92	Zm.19297.1.A1_at	CO524882	hypothetical protein LOC100193577	-	2e-2	At3g49800	BSD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.91	Zm.17352.1.A1_at	CF636500	-	-	4e+0	At5g53030	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	95.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.9	95.7	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.8	95.5	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
3.5	95.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM205422	Mo17xB73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.3	94.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, Contig7394_at, orthologous to the query gene, Zm.7370.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	Contig7394_at	At1g20220	-	-	1e+1	At5g54340	zinc finger (C2H2 type) protein-related	O.I.	H.G.	S.X.	Please select
0.53	69.7	Contig5475_s_at	At1g20220	-	-	5e+0	At5g05960	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	Contig1154_s_at	At1g20220	-	-	4e-13	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.48	63.2	Contig17932_at	At1g20220	-	-	7e+0	At5g66290	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig15779_at	At1g20220	-	-	6e-1	At2g44578	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.45	59.3	Contig20887_s_at	At1g20220	-	-	3e+0	At1g51100	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig2970_s_at	At1g20220	-	-	4e-1	At2g17560	HMGB4 (HIGH MOBILITY GROUP B 4)	O.I.	H.G.	S.X.	Please select
0.43	56.4	HVSMEi0003D23r2_s_at	At1g20220	-	-	8e-1	At3g44840	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	HVSMEh0089H02r2_at	At1g20220	-	-	1e+0	At2g36000	mitochondrial transcription termination factor-related / mTERF-related	O.I.	H.G.	S.X.	Please select
0.41	53.9	HVSMEf0007E14r2_s_at	At1g20220	-	-	8e-2	At5g40810	cytochrome c1, putative	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig1597_s_at	At1g20220	-	-	2e+0	At2g16575	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig18510_at	At1g20220	-	-	5e-11	At5g44240	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig9994_at	At1g20220	-	-	7e-2	At5g60490	FLA12	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig8276_at	At1g20220	-	-	2e+0	At3g54290	-	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig25050_at	At1g20220	-	-	4e+0	At5g56450	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	HZ40A08r_at	At1g20220	-	-	4e+0	At5g52965	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	HVSMEg0015H12r2_s_at	At1g20220	-	-	1e+0	At5g18040	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage