Co-expression analysis

Gene ID	Zm.7370.1.A1_at
Gene name	beta-expansin 1a
Homology with Arabidopsis	Similar to At1g20220: nucleic acid binding (HF=5e-1)
Module size	6 genes
NF	0.17
%ile	12.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	65.7	0.92	Zm.7370.1.A1_at	BM382341	beta-expansin 1a	-	5e-1	At1g20220	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.91	Zm.11830.1.S1_at	CA398394	protein grpE	-	2e-3	At5g17710	EMB1241 (embryo defective 1241)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.92	Zm.13584.1.A1_at	AY107853.1	-	-	1e-72	At1g21640	NADK2	O.I.	H.G.	S.X.	Please select
0.12	5.9	0.91	Zm.14291.1.S1_at	BE056944	40S ribosomal protein S30	-	8e-18	At4g29390	40S ribosomal protein S30 (RPS30B)	O.I.	H.G.	S.X.	Please select
0.09	4.0	0.92	Zm.19297.1.A1_at	CO524882	hypothetical protein LOC100193577	-	2e-2	At3g49800	BSD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.91	Zm.17352.1.A1_at	CF636500	-	-	4e+0	At5g53030	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	95.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.9	95.7	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.8	95.5	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
3.5	95.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM205422	Mo17xB73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.3	94.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.CL359Contig1_at, orthologous to the query gene, Zm.7370.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.1	PsAffx.CL359Contig1_at	At1g20220	-	-	2e+0	At5g37475	translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.67	86.1	PsAffx.CL89Contig1_at	At1g20220	-	-	2e-1	At1g59900	AT-E1 ALPHA	O.I.	H.G.	S.X.	Please select
0.65	83.8	PsAffx.C191000027_at	At1g20220	-	-	7e-1	At2g20420	succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative	O.I.	H.G.	S.X.	Please select
0.62	82.1	PsAffx.CL725Contig1_at	At1g20220	-	-	8e-2	At2g47470	UNE5 (UNFERTILIZED EMBRYO SAC 5)	O.I.	H.G.	S.X.	Please select
0.56	78.2	PsAffx.C32000008_at	At1g20220	-	-	1e+0	At5g03750	-	O.I.	H.G.	S.X.	Please select
0.55	76.3	PsAffx.CL82Contig1_at	At1g20220	-	-	4e-32	At2g47170	ARF1A1C	O.I.	H.G.	S.X.	Please select
0.55	76.3	PsAffx.CL122Contig1_at	At1g20220	-	-	1e-1	At3g56350	superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative	O.I.	H.G.	S.X.	Please select
0.53	74.2	PsAffx.CL243Contig1_at	At1g20220	-	-	4e-3	At5g08530	CI51 (51 kDa subunit of complex I)	O.I.	H.G.	S.X.	Please select
0.52	73.1	PsAffx.C151000027_s_at	At1g20220	-	-	4e+0	At3g54120	reticulon family protein (RTNLB12)	O.I.	H.G.	S.X.	Please select
0.51	72.3	PsAffx.CL72Contig2_at	At1g20220	-	-	3e-1	At2g25190	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	PsAffx.CL56Contig1_at	At1g20220	-	-	6e-7	At1g26480	GRF12 (GENERAL REGULATORY FACTOR 12)	O.I.	H.G.	S.X.	Please select
0.33	46.1	PsAffx.CL262Contig1_at	At1g20220	-	-	3e+0	At1g05330	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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