Co-expression analysis

Gene ID	Zm.7369.1.A1_at
Gene name	integral membrane protein like
Homology with Arabidopsis	Similar to At1g34020: transporter-related (HF=6e-3)
Module size	17 genes
NF	0.61
%ile	81.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	79.5	0.88	Zm.7369.1.A1_at	CD976747	integral membrane protein like	-	6e-3	At1g34020	transporter-related	O.I.	H.G.	S.X.	Please select
0.84	95.8	0.95	Zm.19299.1.A1_at	BM074654	-	-	4e-3	At4g09270	unknown protein	O.I.	H.G.	S.X.	Please select
0.81	94.3	0.95	Zm.13523.1.A1_at	AY108425.1	-	-	6e-1	At5g59470	PQ-loop repeat family protein / transmembrane family protein	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.93	Zm.8110.1.A1_at	CF623866	hypothetical protein LOC100278802	-	3e-25	At5g49820	emb1879 (embryo defective 1879)	O.I.	H.G.	S.X.	Please select
0.76	91.1	0.93	ZmAffx.225.1.S1_at	AI670237	-	-	1e+1	At5g09470	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.76	91.1	0.94	Zm.18525.1.A1_at	CO530497	-	-	1e-4	At5g28150	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.95	Zm.6306.2.A1_at	AI691326	Protein kinase catalytic domain	-	1e-10	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.93	Zm.5989.1.A1_at	AI666066	-	-	3e-1	At4g24960	ATHVA22D	O.I.	H.G.	S.X.	Please select
0.62	79.8	0.93	Zm.13494.1.A1_at	AY108782.1	-	-	4e-1	At2g17300	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.94	Zm.6977.5.A1_at	AI881652	Sucrose synthase	-	1e-11	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	Zm.5451.1.S1_at	AI621979	-	-	8e-4	At4g36970	remorin family protein	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.92	Zm.4426.1.A1_at	CF017278	hypothetical protein LOC100273544	-	1e+0	At1g78020	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.91	Zm.9383.1.A1_at	BM268466	-	-	8e+0	At3g44935	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.95	Zm.5413.1.A1_at	AY112255.1	hypothetical protein LOC100274255	-	5e+0	At2g19340	membrane protein, putative	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.96	Zm.13751.1.S1_at	AY105922.1	-	-	9e+0	At3g01700	AGP11	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.94	Zm.18516.1.A1_a_at	CO526437	-	-	2e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.95	Zm.5851.15.A1_x_at	AI759130	-	-	9e-1	At2g04031	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.7	97.9	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.3	96.1	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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