Co-expression analysis

Gene ID	Zm.7334.1.S1_at
Gene name	kinesin-like protein16
Homology with Arabidopsis	Similar to At5g41310: kinesin motor protein-related (HF=2e-25)
Module size	6 genes
NF	0.66
%ile	87.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.98	Zm.7334.1.S1_at	CD975420	kinesin-like protein16	-	2e-25	At5g41310	kinesin motor protein-related	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.98	Zm.3450.1.A1_at	AW066723	hypothetical protein LOC100191605	-	4e+0	At2g38695	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	Zm.19204.1.S1_at	CA404362	protein phosphatase 2C-like	-	1e-3	At1g09160	protein phosphatase 2C-related / PP2C-related	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	Zm.7332.1.S1_at	CF013037	kinesin-like protein9	-	2e-24	At3g16630	KINESIN-13A	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	Zm.19203.1.S1_at	CO520849	hypothetical protein LOC100193957	-	1e-5	At3g07220	transcriptional activator, putative	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.98	Zm.6731.1.A1_at	AI395998	hypothetical protein LOC100279494	-	1e-14	At1g50670	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.1	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.85831.1.S1_at, orthologous to the query gene, Zm.7334.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	79.5	GmaAffx.85831.1.S1_at	At5g41310	-	-	1e-28	At5g41310	kinesin motor protein-related	O.I.	H.G.	S.X.	Please select
0.06	9.0	GmaAffx.87507.1.S1_at	At5g41310	-	-	4e-1	At5g27760	hypoxia-responsive family protein	O.I.	H.G.	S.X.	Please select
0.03	5.8	GmaAffx.86222.1.S1_at	At5g41310	-	-	4e-11	At5g63940	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.02	4.5	GmaAffx.58857.1.S1_at	At5g41310	-	-	2e-1	At2g42410	ZFP11 (ZINC FINGER PROTEIN 11)	O.I.	H.G.	S.X.	Please select
0.02	4.5	GmaAffx.41781.1.A1_at	At5g41310	-	-	6e-46	At5g22330	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)	O.I.	H.G.	S.X.	Please select
0.01	3.4	Gma.2784.1.S1_at	At5g41310	-	-	2e-4	At3g01790	ribosomal protein L13 family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage