Co-expression analysis

Gene ID	Zm.731.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g26600: nucleolar protein, putative (HF=1e-22)
Module size	36 genes
NF	0.43
%ile	50.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.2	0.96	Zm.731.1.A1_at	CA404803	-	-	1e-22	At4g26600	nucleolar protein, putative	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.98	Zm.5313.2.A1_at	CA398418	60S ribosomal protein L12	-	9e-9	At2g37190	60S ribosomal protein L12 (RPL12A)	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.98	Zm.4536.1.S1_at	CF348908	kinesin heavy chain isolog	-	7e-4	At1g20220	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.97	Zm.5048.1.A1_a_at	AF015522.1	-	-	2e-96	At5g58420	40S ribosomal protein S4 (RPS4D)	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.97	Zm.9913.1.A1_at	BM337435	hypothetical protein LOC100273834	-	1e+0	At3g03826	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.98	Zm.15697.1.A1_at	CD441154	hypothetical protein LOC100191504	-	3e-2	At5g63150	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.97	Zm.599.1.S1_x_at	AY093416.1	chromomethylase	-	2e+0	At5g49330	AtMYB111 (myb domain protein 111)	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.98	Zm.2823.1.A1_at	BI097694	ankyrin protein kinase-like	-	2e+1	At5g40260	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.98	Zm.7770.1.A1_at	CF632652	hypothetical protein LOC100274956	-	7e-1	At1g53935	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.98	Zm.12369.1.S1_at	AY107124.1	-	-	2e+1	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.12546.2.A1_a_at	AI770557	ATP binding protein	-	3e+0	At5g56150	UBC30 (ubiquitin-conjugating enzyme 30)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.98	Zm.16300.1.A1_at	CF018333	hypothetical protein LOC100193263	-	2e-12	At2g40590	40S ribosomal protein S26 (RPS26B)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.98	Zm.16285.1.S1_at	CD970925	inner membrane protein ALBINO3	-	4e-8	At2g28800	ALB3 (ALBINO 3)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.97	Zm.10449.1.S1_at	BQ528465	hypothetical protein LOC100274604	-	5e-4	At4g17670	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.98	Zm.13084.1.S1_at	AI600411	-	-	4e-1	At4g09830	-	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.98	Zm.5070.1.A1_at	AY108736.1	hypothetical protein LOC100193023	-	2e-16	At1g22950	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.2611.1.A1_a_at	BM348249	hypothetical protein LOC100278318	-	3e-1	At1g49820	ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.9288.1.A1_at	BM267822	-	-	9e+0	At5g03060	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.97	Zm.9811.1.A1_at	BM351496	-	-	1e+0	At3g50250	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.98	Zm.12678.2.S1_at	CN844593	-	-	8e-11	At3g05030	NHX2 (SODIUM HYDROGEN EXCHANGER 2)	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.98	ZmAffx.1087.1.S1_s_at	AW036957	herbicide safener binding protein1	-	5e+0	At4g19690	IRT1 (iron-regulated transporter 1)	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.97	Zm.9532.1.A1_at	CF649570	hypothetical protein LOC100273362	-	2e+0	At5g43410	ethylene-responsive factor, putative	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.98	Zm.4553.1.S1_at	BE238641	-	-	4e-1	At4g28860	ckl4 (Casein Kinase I-like 4)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.6532.4.S1_a_at	BM380149	dehydrin 13	-	9e-2	At1g20440	COR47 (COLD-REGULATED 47)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.14844.1.A1_at	AY110776.1	-	-	2e-9	At1g56045	ribosomal protein L41 family protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.98	Zm.19357.1.A1_at	CO533449	pre-mRNA cleavage complex II protein Clp1	-	2e+0	At2g38465	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.98	ZmAffx.525.1.A1_at	AI711680	-	-	8e-1	At5g23170	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.98	Zm.13679.1.A1_at	AW424469	chemocyanin	-	9e-5	At1g72230	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.98	Zm.1412.1.A1_at	CA405074	actin-like protein 3	-	3e-50	At1g13180	DIS1 (DISTORTED TRICHOMES 1)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.98	Zm.6198.1.A1_at	CK370554	hypothetical protein LOC100277123	-	2e+0	At2g37860	LCD1 (LOWER CELL DENSITY 1)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	Zm.15669.1.S1_at	CA403955	plant-specific domain TIGR01570 family protein	-	1e-4	At3g25640	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.18239.1.S1_at	CN845401	sugar carrier protein C	-	1e-1	At5g41090	anac095 (Arabidopsis NAC domain containing protein 95)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	ZmAffx.863.1.A1_at	AI770721	-	-	1e+1	Atcg01300	-	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.97	Zm.1079.1.A1_a_at	U08401.1	hypothetical protein LOC100275493 /// carbonic anhydrase /// carbonic anhydrase	-	1e+0	At3g01500	CA1 (CARBONIC ANHYDRASE 1)	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.98	Zm.8612.1.A1_at	BM074907	hypothetical protein LOC100278970	-	6e+0	At3g27380	SDH2-1	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.98	Zm.5230.1.A1_at	CA404914	acyl-desaturase	-	2e-17	At2g43710	SSI2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.2	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3	91.7	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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