Co-expression analysis

Gene ID	Zm.7165.1.A1_at
Gene name	60S ribosomal protein L19-3
Homology with Arabidopsis	Similar to At4g02230: 60S ribosomal protein L19 (RPL19C) (HF=4e-17)
Module size	12 genes
NF	0.06
%ile	3.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.8	0.90	Zm.7165.1.A1_at	CF635373	60S ribosomal protein L19-3	-	4e-17	At4g02230	60S ribosomal protein L19 (RPL19C)	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.94	Zm.14932.1.A1_at	BI993187	-	-	8e+0	At5g46320	-	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.95	Zm.16205.1.A1_at	AW066608	-	-	1e+1	At5g38630	ACYB-1	O.I.	H.G.	S.X.	Please select
0.12	5.9	0.94	Zm.5894.1.A1_at	AY104468.1	transferase, transferring glycosyl groups	-	1e-8	At4g32120	galactosyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.12	5.9	0.95	Zm.6152.1.S1_at	AI676863	RING zinc finger protein-like /// small basic membrane intrinsic protein1b	-	4e-15	At3g29270	ubiquitin-protein ligase	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.96	Zm.13263.1.S1_at	AY109418.1	nitrite reductase	-	1e+0	At2g15620	NIR1 (NITRITE REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.07	2.9	0.93	Zm.3983.1.S1_at	AI065538	hypothetical protein LOC100278827	-	3e-5	At2g28900	ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1)	O.I.	H.G.	S.X.	Please select
0.07	2.9	0.93	Zm.3604.1.A1_at	CF649529	hypothetical protein LOC100193976	-	4e-2	At5g14000	anac084 (Arabidopsis NAC domain containing protein 84)	O.I.	H.G.	S.X.	Please select
0.05	1.9	0.95	Zm.5382.1.A1_at	CO519926	Hypothetical protein LOC100192877	-	9e-1	At1g73000	-	O.I.	H.G.	S.X.	Please select
0.05	1.9	0.93	Zm.15907.1.A1_at	AI691196	-	-	3e-1	At5g56540	AGP14 (ARABINOGALACTAN PROTEIN 14)	O.I.	H.G.	S.X.	Please select
0.03	1.1	0.94	Zm.8578.3.S1_s_at	BI431120	hypothetical protein LOC100275312	-	6e-3	At1g23710	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	0.7	0.94	Zm.16096.1.A1_at	CF244403	-	-	1e+1	At4g22820	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.9	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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