Co-expression analysis

Gene ID Zm.7159.1.A1_at
Gene name hypothetical protein LOC100276523
Homology with ArabidopsisSimilar to At3g04770: RPSAb (40S ribosomal protein SA B) (HF=1e+0)
Module size 7 genes
NF 0.05
%ile 2.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5267.30.87Zm.7159.1.A1_atCF972430hypothetical protein LOC100276523-1e+0At3g04770RPSAb (40S ribosomal protein SA B)O.I.H.G.S.X.
0.4455.70.88Zm.8743.1.A1_atBM347268blue copper protein-1e-1At1g72230plastocyanin-like domain-containing proteinO.I.H.G.S.X.
0.136.80.89Zm.1967.1.A1_atBG836522pathogenesis-related protein 10 /// pathogenesis-related protein 1-1e-23At1g77180chromatin protein familyO.I.H.G.S.X.
0.104.60.89Zm.9880.2.A1_atAY110782.1--1e+0At5g57310unknown proteinO.I.H.G.S.X.
0.041.50.90Zm.1786.1.S1_atBG842293PHD finger-like domain-containing protein 5A-9e-27At1g07170-O.I.H.G.S.X.
0.020.70.88Zm.4601.1.A1_atBQ539109--2e+0At4g21585ENDO4 (endonuclease 4)O.I.H.G.S.X.
0.020.70.89Zm.10789.1.S1_atAI665421zinc finger, C3HC4 type family protein-1e-8At1g11020zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.498.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.798.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.498.1GSM202290Mo17 immature ear tissue, biological replicate 1GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
8.398.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.797.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.15423.1.A1_at, orthologous to the query gene, Zm.7159.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5078.6PtpAffx.15423.1.A1_atAt3g04770sodium proton exchanger-3e-1At3g48030hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3357.5PtpAffx.11311.1.A1_atAt3g04770hypothetical protein-7e-2At1g72600hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.1321.6PtpAffx.221832.1.S1_atAt3g04770hypothetical protein-4e-6At1g49390oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.1321.6PtpAffx.217578.1.S1_atAt3g04770hypothetical protein-7e-3At1g52540protein kinase, putativeO.I.H.G.S.X.
0.1118.1PtpAffx.95913.1.A1_atAt3g04770hypothetical protein-4e-4At4g32910-O.I.H.G.S.X.
0.1016.3PtpAffx.203685.1.S1_atAt3g04770hypothetical protein-8e-2At3g20800rcd1-like cell differentiation protein, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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