Co-expression analysis

Gene ID	Zm.7147.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g48750: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (HF=3e+0)
Module size	14 genes
NF	0.58
%ile	77.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	92.8	0.98	Zm.7147.1.A1_at	AY105550.1	-	-	3e+0	At1g48750	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	Zm.12201.1.A1_at	BM379502	plastid ADP-glucose pyrophosphorylase large subunit	-	3e-13	At5g19220	APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.69	86.5	0.98	Zm.17145.1.S1_at	AY211982.1	transparent leaf area peptide	-	9e-1	At3g29020	MYB110 (myb domain protein 110)	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.98	Zm.725.1.A1_at	AY107740.1	hypothetical protein LOC100193467	-	7e-14	At3g27740	CARA (CARBAMOYL PHOSPHATE SYNTHETASE A)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.1401.1.A1_at	BF729082	hypothetical protein LOC100275862	-	1e-1	At5g56810	F-box family protein	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.98	Zm.140.1.A1_at	L14063.1	Zea root preferential4	-	3e+0	At1g33030	O-methyltransferase family 2 protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.98	RPTR-Zm-NC_001669-1_at	RPTR-Zm-NC_001669-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.98	Zm.13198.2.A1_a_at	CA400950	-	-	4e+0	At3g43432	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.98	Zm.7149.1.A1_at	BQ539356	hypothetical protein LOC100275045	-	2e+0	At3g20060	UBC19 (ubiquitin-conjugating enzyme19)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.98	Zm.2978.1.A1_at	CF020493	-	-	4e-10	At1g18440	peptidyl-tRNA hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.98	Zm.15486.2.S1_at	AY108982.1	-	-	7e-20	At1g71270	POK (POKY POLLEN TUBE)	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.98	Zm.14288.1.A1_at	BM348960	-	-	1e-37	At1g60780	HAP13 (HAPLESS 13)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.98	Zm.6217.1.A1_at	BE129797	plant-specific domain TIGR01589 family protein	-	7e-1	At1g28600	lipase, putative	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.98	Zm.6218.1.A1_at	AI677344	developmentally-regulated GTP-binding protein 1	-	4e-58	At4g39520	GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.6	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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