Co-expression analysis

Gene ID Zm.7136.1.S1_at
Gene name NADPH-protochlorophyllide oxidoreductase
Homology with ArabidopsisSimilar to At4g27440: PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B) (HF=6e-11)
Module size 17 genes
NF 0.84
%ile 98.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8395.60.98Zm.7136.1.S1_atCO526700NADPH-protochlorophyllide oxidoreductase-6e-11At4g27440PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B)O.I.H.G.S.X.
0.9799.90.99Zm.10812.1.A1_atCD976050--2e-4At2g28450zinc finger (CCCH-type) family proteinO.I.H.G.S.X.
0.9499.50.99Zm.17408.1.A1_atBE129731hypothetical protein LOC100273071-4e-1At2g41380embryo-abundant protein-relatedO.I.H.G.S.X.
0.9199.00.99Zm.10811.7.S1_atBG837489Glycine-rich protein-7e-3At4g39260GR-RBP8O.I.H.G.S.X.
0.9199.00.99Zm.1438.1.S1_atBM073074hypothetical protein LOC100191302-2e-13At4g01100ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1)O.I.H.G.S.X.
0.9097.00.99Zm.7018.1.S1_atAY103620.1DNA-directed RNA polymerase II 8.2 kDa polypeptide-9e-12At1g61700DNA-directed RNA polymerase II, putative (RPB10)O.I.H.G.S.X.
0.8896.70.99Zm.3944.1.S1_atM29411.1opaque endosperm2-9e-1At4g02640BZO2H1O.I.H.G.S.X.
0.8796.40.99Zm.1100.1.S1_atAY107948.1--4e+0At5g37475translation initiation factor-relatedO.I.H.G.S.X.
0.8696.30.99Zm.14513.4.S1_atCK827180hypothetical protein LOC100192746-7e-31At1g09200histone H3O.I.H.G.S.X.
0.8495.80.99Zm.11002.1.S1_atCA401393--5e-9At2g44900armadillo/beta-catenin repeat family protein / F-box family proteinO.I.H.G.S.X.
0.8294.60.99Zm.8973.1.S1_a_atCF058354hypothetical protein LOC100191732-2e-2At2g18770signal recognition particle bindingO.I.H.G.S.X.
0.7992.80.99Zm.7574.1.A1_atCO527472ubiquitin fusion degradation protein 1-2e-16At4g38930ubiquitin fusion degradation UFD1 family proteinO.I.H.G.S.X.
0.7992.80.99Zm.16913.1.S1_atBQ619268GT1 protein-2e-24At4g16370ATOPT3 (OLIGOPEPTIDE TRANSPORTER)O.I.H.G.S.X.
0.7691.10.99Zm.10811.2.S1_atBM079148--8e+0At4g14730transmembrane protein-relatedO.I.H.G.S.X.
0.6785.80.98Zm.3942.1.A1_atCD998416hypothetical protein LOC100192575-2e-7At1g35190oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.6582.10.99Zm.3845.2.A1_atCA403952hypothetical protein LOC100272900-2e-50At3g15020malate dehydrogenase (NAD), mitochondrial, putativeO.I.H.G.S.X.
0.6179.50.99Zm.9641.1.A1_atBM349151--1e-3At5g10980histone H3O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.397.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.997.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.096.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.696.4GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.492.2GSM320463protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage