Co-expression analysis

Gene ID	Zm.7128.1.A1_a_at
Gene name	hypothetical protein LOC100276381
Homology with Arabidopsis	Similar to At5g25290: F-box family protein (HF=2e+0)
Module size	15 genes
NF	0.75
%ile	95.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.9	0.99	Zm.7128.1.A1_a_at	BM333224	hypothetical protein LOC100276381	-	2e+0	At5g25290	F-box family protein	O.I.	H.G.	S.X.	Please select
0.85	95.9	0.99	Zm.3934.1.S1_at	AI947382	hypothetical protein LOC100277172	-	8e+0	At4g28460	unknown protein	O.I.	H.G.	S.X.	Please select
0.85	95.9	0.99	Zm.3937.2.A1_at	AY112354.1	-	-	4e+0	At5g07020	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.81	94.3	0.99	Zm.3929.1.S1_at	CO534253	hypothetical protein LOC100274493	-	7e-1	At1g78680	ATGGH2 (gamma-glutamyl hydrolase 2)	O.I.	H.G.	S.X.	Please select
0.74	90.3	0.99	Zm.14490.1.S1_at	AY104507.1	-	-	3e-4	At2g25070	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.99	Zm.14702.1.A1_at	CF628124	Ribosomal protein S11	-	1e+0	At5g46730	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.99	ZmAffx.289.1.A1_at	AI670251	-	-	2e+1	At5g15430	calmodulin-binding protein-related	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.99	RPTR-Zm-AF292559-1_at	RPTR-Zm-AF292559-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.72	88.6	0.99	Zm.16527.1.A1_s_at	CF637778	hypothetical protein LOC100277800	-	5e-13	At1g03260	-	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.99	Zm.2978.1.S1_at	CD981283	peptidyl-tRNA hydrolase	-	4e-10	At1g18440	peptidyl-tRNA hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.99	Zm.14474.1.A1_at	AY104519.1	-	-	1e-33	At2g34560	katanin, putative	O.I.	H.G.	S.X.	Please select
0.70	87.0	0.99	Zm.16530.1.A1_at	BM953023	-	-	3e-51	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.69	86.5	0.99	Zm.3926.1.A1_at	BU050394	hypothetical protein LOC100278398	-	2e+0	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.99	Zm.353.1.S1_at	CF636600	profilin	-	2e-12	At4g29350	PFN2 (PROFILIN 2)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.99	Zm.16527.1.A1_at	CF637778	hypothetical protein LOC100277800	-	5e-13	At1g03260	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.7	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.1	90.8	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage