Co-expression analysis

Gene ID	Zm.7122.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g35580: CINV1 (cytosolic invertase 1) (HF=2e+0)
Module size	6 genes
NF	0.43
%ile	51.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.99	Zm.7122.1.A1_at	AY111472.1	-	-	2e+0	At1g35580	CINV1 (cytosolic invertase 1)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.405.1.A1_at	AF037034.2	hypothetical LOC541674	-	2e-1	At5g05340	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.99	Zm.2942.1.A1_at	AY105337.1	replication factor C subunit 2	-	8e-38	At1g21690	emb1968 (embryo defective 1968)	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.99	Zm.2952.1.A1_a_at	CF629660	hypothetical protein LOC100192920	-	2e-3	At3g26680	SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.99	Zm.7121.2.S1_at	AF457960.1	-	-	5e-6	At3g12120	FAD2 (FATTY ACID DESATURASE 2)	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.99	Zm.17316.1.A1_at	CK369406	-	-	4e+0	At5g38317	LCR58 (Low-molecular-weight cysteine-rich 58)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.0	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1612352_at, orthologous to the query gene, Zm.7122.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1612352_at	At1g35580	-	-	4e-1	At1g11520	pliceosome associated protein-related	O.I.	H.G.	S.X.	Please select
0.27	34.0	1611551_at	At1g35580	-	-	2e-24	At2g17410	ARID/BRIGHT DNA-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.14	14.4	1620897_at	At1g35580	similar to F-box-containing protein 2	-	3e-4	At1g06110	SKIP16 (SKP1/ASK-interacting protein 16)	O.I.	H.G.	S.X.	Please select
0.11	11.3	1612441_at	At1g35580	-	-	2e-22	At1g43900	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.04	5.2	1613282_at	At1g35580	hypothetical protein LOC100253598	-	3e-1	At5g66460	(1-4)-beta-mannan endohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.02	3.2	1614708_at	At1g35580	hypothetical protein LOC100248174	-	2e-55	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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