Co-expression analysis

Gene ID Zm.7097.2.A1_a_at
Gene name hypothetical protein LOC100273341 /// 40S ribosomal protein S18
Homology with ArabidopsisSimilar to At1g22780: PFL (POINTED FIRST LEAVES) (HF=2e-27)
Module size 6 genes
NF 0.68
%ile 90.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.97Zm.7097.2.A1_a_atCF019338hypothetical protein LOC100273341 /// 40S ribosomal protein S18-2e-27At1g22780PFL (POINTED FIRST LEAVES)O.I.H.G.S.X.
0.9199.00.97Zm.7096.1.A1_atBM338621eukaryotic translation initiation factor 6-1e-29At3g55620emb1624 (embryo defective 1624)O.I.H.G.S.X.
0.8395.60.97Zm.7097.1.S1_atBQ279744hypothetical protein LOC100273341-4e-29At1g22780PFL (POINTED FIRST LEAVES)O.I.H.G.S.X.
0.6785.80.98Zm.5721.1.S1_atAI637090hypothetical protein LOC100191423-9e-2At4g12460ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B)O.I.H.G.S.X.
0.4658.40.97Zm.17766.1.S1_atCK371550--3e+0At5g14730unknown proteinO.I.H.G.S.X.
0.3538.90.97Zm.9760.1.A1_atBM335574hypothetical protein LOC100278683-1e+0At5g67060HEC1 (HECATE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.895.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.895.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.895.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.795.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.294.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.294.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.993.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.993.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.492.2GSM205368B73xMo17 13 DAP endosperm tissue biological replicate 1GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAPLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os07g0173700, orthologous to the query gene, Zm.7097.2.A1_a_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7893.4Os07g0173700At1g22780-40S ribosomal protein S184e-41At1g3403040S ribosomal protein S18 (RPS18B)O.I.H.G.S.X.
0.7793.1Os11g0168200At1g22780-60S ribosomal protein L34e-95At1g43170ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)O.I.H.G.S.X.
0.7391.1Os02g0478700At1g22780-Ribosomal protein S27 (AT3g61110/T27I15_200)4e-19At3g61110ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)O.I.H.G.S.X.
0.6887.5Os04g0430100At1g22780-Plectin/S10, N-terminal domain containing protein9e-18At4g2574040S ribosomal protein S10 (RPS10A)O.I.H.G.S.X.
0.6787.2Os12g0167900At1g22780-60S ribosomal protein L31e-116At1g43170ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)O.I.H.G.S.X.
0.6583.8Os03g0807800At1g22780-40S ribosomal protein S22e-16At3g5749040S ribosomal protein S2 (RPS2D)O.I.H.G.S.X.
0.6382.7Os01g0686800At1g22780-Guanine nucleotide-binding protein betasubunit-like protein (GPB-LR) (RWD)1e-23At1g18080ATARCAO.I.H.G.S.X.
0.6382.7Os02g0591700At1g22780-Ribosomal protein L6 (Fragment)9e-6At1g7406060S ribosomal protein L6 (RPL6B)O.I.H.G.S.X.
0.6079.7Os07g0208000At1g22780-40S ribosomal protein S15a7e-49At1g07770RPS15A (ribosomal protein s15a)O.I.H.G.S.X.
0.6079.7Os01g0205500At1g22780-60S ribosomal protein L11-2 (L16). Splice isoform21e-109At4g18730RPL16BO.I.H.G.S.X.
0.5978.0Os09g0507800At1g22780-60S ribosomal protein L7a2e-86At3g6287060S ribosomal protein L7A (RPL7aB)O.I.H.G.S.X.
0.5877.0Os03g0200500At1g22780--2e-5At3g0484040S ribosomal protein S3A (RPS3aA)O.I.H.G.S.X.
0.5371.3Os05g0490100At1g22780-60S ribosomal protein L301e-3At3g1874060S ribosomal protein L30 (RPL30C)O.I.H.G.S.X.
0.5371.3Os02g0814700At1g22780-60S ribosomal protein L17 [Oryza sativa (japonicacultivar-group)]4e-78At1g0448060S ribosomal protein L23 (RPL23A)O.I.H.G.S.X.
0.5068.0Os03g0343500At1g22780-60S ribosomal protein L22-22e-24At3g0556060S ribosomal protein L22-2 (RPL22B)O.I.H.G.S.X.
0.4964.4Os03g0141000At1g22780-60S ribosomal protein L215e-21At1g0969060S ribosomal protein L21 (RPL21C)O.I.H.G.S.X.
0.4863.7Os02g0534800At1g22780-40S ribosomal protein S14 (Clone MCH2)3e-67At3g1151040S ribosomal protein S14 (RPS14B)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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