Co-expression analysis

Gene ID	Zm.7097.2.A1_a_at
Gene name	hypothetical protein LOC100273341 /// 40S ribosomal protein S18
Homology with Arabidopsis	Similar to At1g22780: PFL (POINTED FIRST LEAVES) (HF=2e-27)
Module size	6 genes
NF	0.68
%ile	90.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.97	Zm.7097.2.A1_a_at	CF019338	hypothetical protein LOC100273341 /// 40S ribosomal protein S18	-	2e-27	At1g22780	PFL (POINTED FIRST LEAVES)	O.I.	H.G.	S.X.	Please select
0.91	99.0	0.97	Zm.7096.1.A1_at	BM338621	eukaryotic translation initiation factor 6	-	1e-29	At3g55620	emb1624 (embryo defective 1624)	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.97	Zm.7097.1.S1_at	BQ279744	hypothetical protein LOC100273341	-	4e-29	At1g22780	PFL (POINTED FIRST LEAVES)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.5721.1.S1_at	AI637090	hypothetical protein LOC100191423	-	9e-2	At4g12460	ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.17766.1.S1_at	CK371550	-	-	3e+0	At5g14730	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.9760.1.A1_at	BM335574	hypothetical protein LOC100278683	-	1e+0	At5g67060	HEC1 (HECATE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	95.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM205368	B73xMo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

Inter-species module comparison

A co-expression module including the barley gene, Contig1342_at, orthologous to the query gene, Zm.7097.2.A1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	Contig1342_at	At1g22780	-	-	8e-21	At1g22780	PFL (POINTED FIRST LEAVES)	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig5635_at	At1g22780	-	-	1e+0	At3g55860	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig5634_x_at	At1g22780	-	-	5e+0	At5g53940	yippee family protein	O.I.	H.G.	S.X.	Please select
0.04	3.4	Contig19611_at	At1g22780	-	-	4e-1	At5g11120	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	3.4	Contig14_at	At1g22780	-	-	2e-18	At4g40040	histone H3.2	O.I.	H.G.	S.X.	Please select
0.04	3.4	HVSMEi0021H22r2_at	At1g22780	-	-	4e+0	At5g19260	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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