Co-expression analysis

Gene ID Zm.7097.2.A1_a_at
Gene name hypothetical protein LOC100273341 /// 40S ribosomal protein S18
Homology with ArabidopsisSimilar to At1g22780: PFL (POINTED FIRST LEAVES) (HF=2e-27)
Module size 6 genes
NF 0.68
%ile 90.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.97Zm.7097.2.A1_a_atCF019338hypothetical protein LOC100273341 /// 40S ribosomal protein S18-2e-27At1g22780PFL (POINTED FIRST LEAVES)O.I.H.G.S.X.
0.9199.00.97Zm.7096.1.A1_atBM338621eukaryotic translation initiation factor 6-1e-29At3g55620emb1624 (embryo defective 1624)O.I.H.G.S.X.
0.8395.60.97Zm.7097.1.S1_atBQ279744hypothetical protein LOC100273341-4e-29At1g22780PFL (POINTED FIRST LEAVES)O.I.H.G.S.X.
0.6785.80.98Zm.5721.1.S1_atAI637090hypothetical protein LOC100191423-9e-2At4g12460ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B)O.I.H.G.S.X.
0.4658.40.97Zm.17766.1.S1_atCK371550--3e+0At5g14730unknown proteinO.I.H.G.S.X.
0.3538.90.97Zm.9760.1.A1_atBM335574hypothetical protein LOC100278683-1e+0At5g67060HEC1 (HECATE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.895.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.895.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.895.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.795.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.294.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.294.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.993.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.993.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.492.2GSM205368B73xMo17 13 DAP endosperm tissue biological replicate 1GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAPLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g22780, orthologous to the query gene, Zm.7097.2.A1_a_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At1g22780838884PFL (POINTED FIRST LEAVES)S18 ribosomal protein involved in the binding of f-Met tRNA during initiation of mRNA translation. Expression restricted to meristems. Mutant phenotype-pointed first leaves,reduced fresh weight, growth retardation.O.I.H.G.S.X.
0.9396.4At5g2785083284860S ribosomal protein L18 (RPL18C)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, vacuole, large ribosomal subunit, membrane;MOFPAO.I.H.G.S.X.
0.9095.1At5g1613083147040S ribosomal protein S7 (RPS7C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, plasma membrane, membrane;MPOFO.I.H.G.S.X.
0.9095.1At1g23290838938RPL27ABEncodes a ribosomal protein L27A, a constituent of the large subunit of the ribosomal complex. Regulated by TCP20.O.I.H.G.S.X.
0.8994.6At2g3616081818840S ribosomal protein S14 (RPS14A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane, chloroplast, membrane;BOPMAFO.I.H.G.S.X.
0.8894.0At3g0256082130840S ribosomal protein S7 (RPS7B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast, membrane;MPOFO.I.H.G.S.X.
0.8894.0At5g6067083618860S ribosomal protein L12 (RPL12C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MABOFPO.I.H.G.S.X.
0.8793.5At3g4503082363840S ribosomal protein S20 (RPS20A)F:structural constituent of ribosome, RNA binding;P:translation;C:cytosolic small ribosomal subunit, small ribosomal subunit;BOMAPFO.I.H.G.S.X.
0.8693.1At3g0208082112040S ribosomal protein S19 (RPS19A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall;MOAPFBO.I.H.G.S.X.
0.8693.1At2g3448081801160S ribosomal protein L18A (RPL18aB)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane;MOFPO.I.H.G.S.X.
0.8592.4At1g69620843298RPL34 (RIBOSOMAL PROTEIN L34)putative 60S ribosomal protein L34O.I.H.G.S.X.
0.8491.9At5g4793083484440S ribosomal protein S27 (RPS27D)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, plasma membrane;MOPFAO.I.H.G.S.X.
0.8491.9At2g39460818531RPL23AA (RIBOSOMAL PROTEIN L23AA)Encodes a 60S ribosomal protein L23aA (AtrpL23aA). Paralog of RLPL23aB.O.I.H.G.S.X.
0.8491.9At3g5374082454160S ribosomal protein L36 (RPL36B)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane, membrane;MPOFO.I.H.G.S.X.
0.8491.9At5g4770083482160S acidic ribosomal protein P1 (RPP1C)F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane;MFPOABO.I.H.G.S.X.
0.8491.9At1g0110083941060S acidic ribosomal protein P1 (RPP1A)F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane;MFPOAO.I.H.G.S.X.
0.8391.4At3g6287082546260S ribosomal protein L7A (RPL7aB)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, plasma membrane, membrane;MOFAPO.I.H.G.S.X.
0.8391.4At4g1500082715960S ribosomal protein L27 (RPL27C)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, intracellular;MOFPO.I.H.G.S.X.
0.8391.4At4g1739082745160S ribosomal protein L15 (RPL15B)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, nucleolus, membrane;MAOPFO.I.H.G.S.X.
0.8391.4At3g46040823747RPS15AD (ribosomal protein S15A D)Regulated by TCP20.O.I.H.G.S.X.
0.8290.9At2g0125081465260S ribosomal protein L7 (RPL7B)F:structural constituent of ribosome, transcription regulator activity;P:translation;C:in 8 components;MOFAPO.I.H.G.S.X.
0.8290.9At5g2777083283960S ribosomal protein L22 (RPL22C)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, nucleolus, plasma membrane, membrane;MFOPO.I.H.G.S.X.
0.8290.9At2g36170818189ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A)F:protein binding, structural constituent of ribosome;P:protein modification process, translation;C:cytosolic large ribosomal subunit, nucleolus;MPOFVBO.I.H.G.S.X.
0.8190.4At1g73230843657nascent polypeptide-associated complex (NAC) domain-containing proteinF:molecular_function unknown;P:response to salt stress;C:cellular_component unknown;MFPOO.I.H.G.S.X.
0.8190.4At3g5954082512360S ribosomal protein L38 (RPL38B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPAO.I.H.G.S.X.
0.8190.4At5g2390083245560S ribosomal protein L13 (RPL13D)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, membrane;MFOPO.I.H.G.S.X.
0.8190.4At1g2688083833160S ribosomal protein L34 (RPL34A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, nucleolus, chloroplast;MOPFAO.I.H.G.S.X.
0.8190.4At2g3719081829560S ribosomal protein L12 (RPL12A)F:structural constituent of ribosome;P:response to cold, ribosome biogenesis;C:in 7 components;MBAOFPO.I.H.G.S.X.
0.8190.4At5g1520083137240S ribosomal protein S9 (RPS9B)F:structural constituent of ribosome;P:translation;C:in 7 components;POMBFAO.I.H.G.S.X.
0.8190.4At1g3403084030040S ribosomal protein S18 (RPS18B)F:structural constituent of ribosome, RNA binding, nucleic acid binding;P:translation;C:in 6 components;BOPMAFO.I.H.G.S.X.
0.8190.4At1g72370843569P40acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue.O.I.H.G.S.X.
0.8190.4At4g00100828167ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf developmentO.I.H.G.S.X.
0.8190.4At1g6743084306360S ribosomal protein L17 (RPL17B)F:structural constituent of ribosome;P:translation;C:in 6 components;MOBAFPO.I.H.G.S.X.
0.8190.4At2g2771081731760S acidic ribosomal protein P2 (RPP2B)F:structural constituent of ribosome;P:translational elongation, response to cold;C:in 8 components;MFPOABO.I.H.G.S.X.
0.8089.8At3g2339082192060S ribosomal protein L36a/L44 (RPL36aA)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MOFAPBO.I.H.G.S.X.
0.8089.8At1g0836083735660S ribosomal protein L10A (RPL10aA)F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane;BOMPAFO.I.H.G.S.X.
0.8089.8At2g0999081545640S ribosomal protein S16 (RPS16A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, chloroplast, membrane;BOMAFPO.I.H.G.S.X.
0.8089.8At3g0968082012540S ribosomal protein S23 (RPS23A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, nucleolus;BOPMFAO.I.H.G.S.X.
0.8089.8At4g2709082881760S ribosomal protein L14 (RPL14B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:in 8 components;MOFPAO.I.H.G.S.X.
0.8089.8At3g0711081989760S ribosomal protein L13A (RPL13aA)F:structural constituent of ribosome;P:translation;C:in 6 components;BOMAPFO.I.H.G.S.X.
0.8089.8At2g27530817299PGY1 (PIGGYBACK1)Encodes ribosomal protein L10aP. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.O.I.H.G.S.X.
0.8089.8At3g6077082524840S ribosomal protein S13 (RPS13A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, cell wall, chloroplast;MOAFPO.I.H.G.S.X.
0.7989.1At3g0484081964440S ribosomal protein S3A (RPS3aA)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane, chloroplast;MOAPFBO.I.H.G.S.X.
0.7989.1At5g0709083060040S ribosomal protein S4 (RPS4B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane;MOAFPO.I.H.G.S.X.
0.7989.1At4g1432082707460S ribosomal protein L36a/L44 (RPL36aB)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MOFAPBO.I.H.G.S.X.
0.7888.6At1g02780839407emb2386 (embryo defective 2386)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation, ribosome biogenesis;C:in 6 components;MAOFPO.I.H.G.S.X.
0.7888.6At1g2740083963060S ribosomal protein L17 (RPL17A)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, plasma membrane, chloroplast, vacuole;MOBAFPO.I.H.G.S.X.
0.7888.6At3g48930824054EMB1080 (embryo defective 1080)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, membrane;MOBAFPO.I.H.G.S.X.
0.7788.0At5g4152083415440S ribosomal protein S10 (RPS10B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, chloroplast;MPBOFVO.I.H.G.S.X.
0.7788.0At5g10360830900EMB3010 (embryo defective 3010)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane;MAOFPO.I.H.G.S.X.
0.7788.0At2g0439081497840S ribosomal protein S17 (RPS17A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus, plasma membrane;MOAFPO.I.H.G.S.X.
0.7788.0At4g3467082961940S ribosomal protein S3A (RPS3aB)F:structural constituent of ribosome;P:translation;C:in 6 components;MOAPFBO.I.H.G.S.X.
0.7788.0At5g6117083623840S ribosomal protein S19 (RPS19C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, vacuole;MOAPFBO.I.H.G.S.X.
0.7788.0At3g55280824694RPL23AB (RIBOSOMAL PROTEIN L23AB)60S ribosomal protein L23A (RPL23aB). Paralog of RPL23aAO.I.H.G.S.X.
0.7788.0At2g37270818304ATRPS5B (RIBOSOMAL PROTEIN 5B)One of two genes encoding the ribosomal protein S5. Expressed at a lower level compared to ATRPS5A.O.I.H.G.S.X.
0.7687.4At5g19510832071elongation factor 1B alpha-subunit 2 (eEF1Balpha2)F:translation elongation factor activity;P:translational elongation, defense response to bacterium;C:apoplast, eukaryotic translation elongation factor 1 complex;MOPFBO.I.H.G.S.X.
0.7687.4At1g1593083816340S ribosomal protein S12 (RPS12A)F:structural constituent of ribosome;P:response to cadmium ion, response to salt stress, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome;MAOFPO.I.H.G.S.X.
0.7687.4At2g47110819323UBQ6polyubiquitin geneO.I.H.G.S.X.
0.7687.4At3g49010824062ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).O.I.H.G.S.X.
0.7687.4At3g1151082032440S ribosomal protein S14 (RPS14B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus;BOPMAFO.I.H.G.S.X.
0.7586.9At4g1810082753560S ribosomal protein L32 (RPL32A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus;MAOPFO.I.H.G.S.X.
0.7586.9At1g1854083843560S ribosomal protein L6 (RPL6A)F:structural constituent of ribosome;P:translation;C:in 8 components;MOFPAO.I.H.G.S.X.
0.7586.9At1g4188084079960S ribosomal protein L35a (RPL35aB)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, membrane;MOFPAO.I.H.G.S.X.
0.7586.9At3g0556081972260S ribosomal protein L22-2 (RPL22B)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus, plasma membrane;MFOPO.I.H.G.S.X.
0.7586.9At5g5985083610740S ribosomal protein S15A (RPS15aF)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cell wall, membrane;BOMAPFO.I.H.G.S.X.
0.7586.9At2g4184081878440S ribosomal protein S2 (RPS2C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane;BOMFPAVO.I.H.G.S.X.
0.7486.1At3g5343082451160S ribosomal protein L12 (RPL12B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, membrane;MBAOFPO.I.H.G.S.X.
0.7486.1At2g3337081790060S ribosomal protein L23 (RPL23B)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, nucleolus;BOPMAFO.I.H.G.S.X.
0.7486.1At3g2223082178760S ribosomal protein L27 (RPL27B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome;MOFPO.I.H.G.S.X.
0.7385.5At3g0920082007660S acidic ribosomal protein P0 (RPP0B)F:structural constituent of ribosome;P:translational elongation, response to salt stress, response to cold, translation;C:in 7 components;MOAFPBO.I.H.G.S.X.
0.7284.8At3g2483082208160S ribosomal protein L13A (RPL13aB)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit, membrane;OMBAPFO.I.H.G.S.X.
0.7284.8At4g09800826569RPS18C (S18 RIBOSOMAL PROTEIN)encodes a ribosomal protein S18C, a constituent of the small subunit of the ribosomal complexO.I.H.G.S.X.
0.7184.2At3g5258082442440S ribosomal protein S14 (RPS14C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOPMAFO.I.H.G.S.X.
0.7083.5At5g0287083175660S ribosomal protein L4/L1 (RPL4D)F:structural constituent of ribosome;P:translation;C:in 8 components;MOAFPBO.I.H.G.S.X.
0.7083.5At3g0492081965240S ribosomal protein S24 (RPS24A)F:structural constituent of ribosome, nucleotide binding;P:translation, ribosome biogenesis;C:in 7 components;MOFPAO.I.H.G.S.X.
0.6982.9At1g7405084374460S ribosomal protein L6 (RPL6C)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, intracellular, plasma membrane, membrane;MOFPAO.I.H.G.S.X.
0.6882.2At3g52590824425UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)Ubiquitin extension proteinO.I.H.G.S.X.
0.6882.2At2g4412081901860S ribosomal protein L7 (RPL7C)F:structural constituent of ribosome, transcription regulator activity;P:translation;C:in 7 components;MOAFPO.I.H.G.S.X.
0.6882.2At2g4761081937460S ribosomal protein L7A (RPL7aA)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, nucleolus, plasma membrane, chloroplast;MOFAPO.I.H.G.S.X.
0.6680.1At2g3161081771940S ribosomal protein S3 (RPS3A)F:structural constituent of ribosome;P:response to salt stress, translation, response to abiotic stimulus;C:in 6 components;BOMAPFO.I.H.G.S.X.
0.6680.1At3g25520822138ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)Encodes ribosomal protein L5 that binds to 5S ribosomal RNA and in involved in its export from the nucleus to the cytoplasm. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.O.I.H.G.S.X.
0.6277.3At4g18730827607RPL16Bencodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root and shoot apical meristems and in lateral root primordia. Expression in lateral root primordia is induced by auxin.O.I.H.G.S.X.
0.4761.2At1g10840837627TIF3H1Encodes eukaryotic initiation factor 3H1 subunit (TIF3H1).O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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