Co-expression analysis

Gene ID Zm.7056.6.A1_at
Gene name RWD domain-containing protein 1
Homology with ArabidopsisSimilar to At3g52550: - (HF=1e-2)
Module size 6 genes
NF 0.30
%ile 27.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.93Zm.7056.6.A1_atCF051906RWD domain-containing protein 1-1e-2At3g52550-O.I.H.G.S.X.
0.5065.70.95Zm.7056.5.S1_atAY108536.1hypothetical protein LOC100272517-3e-15At5g45390CLPP4 (CLP PROTEASE P4)O.I.H.G.S.X.
0.5065.70.96Zm.7056.12.S1_atAI746152--2e-1At5g3974060S ribosomal protein L5 (RPL5B)O.I.H.G.S.X.
0.2928.10.92Zm.14903.1.A1_atCF634216Asparagine synthetase 4-1e-4At3g47340ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)O.I.H.G.S.X.
0.1710.60.92Zm.1515.1.A1_atBM380375P-protein-5e-4At3g07630ADT2 (arogenate dehydratase 2)O.I.H.G.S.X.
0.125.90.94Zm.10949.1.A1_atBM333171hypothetical protein LOC100279654-7e-15At1g06220MEE5 (MATERNAL EFFECT EMBRYO ARREST 5)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.499.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.099.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.298.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.098.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.298.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.898.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.896.6GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.896.6GSM320466protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.796.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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