Co-expression analysis

Gene ID	Zm.7056.5.S1_at
Gene name	hypothetical protein LOC100272517
Homology with Arabidopsis	Similar to At5g45390: CLPP4 (CLP PROTEASE P4) (HF=3e-15)
Module size	6 genes
NF	0.36
%ile	38.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	71.6	0.93	Zm.7056.5.S1_at	AY108536.1	hypothetical protein LOC100272517	-	3e-15	At5g45390	CLPP4 (CLP PROTEASE P4)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.94	Zm.12191.1.A1_at	BM380192	-	-	4e+0	At3g24280	SMAP2 (small acidic protein 2)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	Zm.17496.1.A1_at	CK144540	-	-	4e+0	At3g10585	myb family transcription factor / I-box binding factor-related protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.95	Zm.11898.1.A1_at	CA400038	-	-	5e+0	At5g43460	lesion inducing protein-related	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.94	Zm.7056.12.S1_at	AI746152	-	-	2e-1	At5g39740	60S ribosomal protein L5 (RPL5B)	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.94	Zm.5707.1.S1_at	CF631594	copper chaperone	-	3e-2	At1g66240	ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.1	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage