CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.7051.1.S1_at

Gene name hypothetical protein LOC100277200
Homology with Arabidopsis Similar to At5g61997: unknown protein (HF=1e+0)

Module size 6 genes

NF 0.47

%ile 57.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.99 Zm.7051.1.S1_at AI833408 hypothetical protein LOC100277200 - 1e+0 At5g61997 unknown protein O.I. H.G. S.X.
0.67 85.8 0.99 Zm.7049.1.A1_at AW331717 huntingtin interacting protein K - 4e-13 At3g06610 DNA-binding enhancer protein-related O.I. H.G. S.X.
0.67 85.8 0.99 Zm.7048.1.A1_at AI677399 hypothetical protein LOC100194145 - 6e-7 At4g30996 unknown protein O.I. H.G. S.X.
0.33 36.0 0.99 Zm.5824.1.A1_at AI649789 - - 2e+0 At5g10680 calmodulin-binding protein-related O.I. H.G. S.X.
0.32 33.4 0.99 Zm.6614.1.A1_at CO533019 coronatine-insensitive protein 1 - 1e+0 At2g26030 F-box family protein O.I. H.G. S.X.
0.32 33.4 0.99 Zm.5833.1.A1_at CA398697 adenylate kinase - 1e-2 At5g47840 AMK2 (Adenosine monophosphate kinase) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.0 95.8 GSM253279 ZM_8d_SG200_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
3.4 94.9 GSM320441 protocol: mRNA - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8 93.5 GSM375788 Deep-sowing 10d treatment Control, biological rep1 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
2.7 93.2 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5 92.6 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3 91.7 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.0 90.2 GSM205374 B73 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.0 90.2 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.0 90.2 GSM205371 Mo17xB73 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
1.9 89.6 GSM205369 Mo17 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

Inter-species module comparison

A co-expression module including the grape gene, 1622691_s_at, orthologous to the query gene, Zm.7051.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 90.8 1622691_s_at At5g61997 hypothetical protein LOC100264325 - 7e-13 At1g09640 elongation factor 1B-gamma, putative / eEF-1B gamma, putative O.I. H.G. S.X.
0.67 87.9 1609012_at At5g61997 hypothetical protein LOC100254309 - 1e-4 At2g01600 epsin N-terminal homology (ENTH) domain-containing protein O.I. H.G. S.X.
0.59 80.6 1613866_s_at At5g61997 hypothetical protein LOC100245100 - 2e-68 At4g12590 unknown protein O.I. H.G. S.X.
0.44 64.1 1613821_at At5g61997 papain-like cysteine proteinase - 1e-11 At4g16190 cysteine proteinase, putative O.I. H.G. S.X.
0.43 61.5 1608150_at At5g61997 - - 2e-3 At4g32520 SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3) O.I. H.G. S.X.
0.41 58.7 1611036_at At5g61997 hypothetical protein LOC100248521 - 4e-7 At4g11150 TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) O.I. H.G. S.X.
0.39 54.9 1618879_s_at At5g61997 hypothetical protein LOC100254193 - 7e-44 At1g25682 cell cycle control protein-related O.I. H.G. S.X.
0.34 46.8 1615418_at At5g61997 hypothetical protein LOC100256204 - 2e-13 At5g02040 PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1) O.I. H.G. S.X.
0.31 41.3 1620764_a_at At5g61997 hypothetical protein LOC100261589 - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha O.I. H.G. S.X.
0.29 37.7 1612305_at At5g61997 hypothetical protein LOC100263408 - 2e-12 At3g15660 GRX4 (GLUTAREDOXIN 4) O.I. H.G. S.X.
0.29 37.7 1616197_at At5g61997 similar to cdc2MsC - 1e+0 At3g05920 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.29 37.7 1616209_a_at At5g61997 similar to ZFWD1 (zinc finger WD40 repeat protein 1); nucleic acid binding / zinc ion binding - 3e-5 At5g51980 WD-40 repeat family protein / zfwd2 protein (ZFWD2), putative O.I. H.G. S.X.
0.29 37.7 1606789_at At5g61997 similar to vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) - 7e-83 At4g34720 AVA-P1 O.I. H.G. S.X.
0.22 25.6 1608990_at At5g61997 similar to peptidyl-prolyl cis-trans isomerase PPIC-type family protein - 2e-33 At1g26550 peptidyl-prolyl cis-trans isomerase PPIC-type family protein O.I. H.G. S.X.
0.22 25.6 1617347_at At5g61997 hypothetical protein LOC100257949 - 7e-18 At3g05810 unknown protein O.I. H.G. S.X.
0.20 22.4 1615993_at At5g61997 hypothetical protein LOC100263412 - 2e-10 At1g80410 EMB2753 (EMBRYO DEFECTIVE 2753) O.I. H.G. S.X.
0.19 20.9 1618385_at At5g61997 hypothetical protein LOC100246711 - 0 At1g07940 elongation factor 1-alpha / EF-1-alpha O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum

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