Co-expression analysis

Gene ID	Zm.7051.1.S1_at
Gene name	hypothetical protein LOC100277200
Homology with Arabidopsis	Similar to At5g61997: unknown protein (HF=1e+0)
Module size	6 genes
NF	0.47
%ile	57.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.99	Zm.7051.1.S1_at	AI833408	hypothetical protein LOC100277200	-	1e+0	At5g61997	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.7049.1.A1_at	AW331717	huntingtin interacting protein K	-	4e-13	At3g06610	DNA-binding enhancer protein-related	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.7048.1.A1_at	AI677399	hypothetical protein LOC100194145	-	6e-7	At4g30996	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.99	Zm.5824.1.A1_at	AI649789	-	-	2e+0	At5g10680	calmodulin-binding protein-related	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.99	Zm.6614.1.A1_at	CO533019	coronatine-insensitive protein 1	-	1e+0	At2g26030	F-box family protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.99	Zm.5833.1.A1_at	CA398697	adenylate kinase	-	1e-2	At5g47840	AMK2 (Adenosine monophosphate kinase)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	95.8	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.4	94.9	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
2.7	93.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3	91.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.0	90.2	GSM205374	B73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.0	90.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.0	90.2	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
1.9	89.6	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

Inter-species module comparison

A co-expression module including the wheat gene, Ta.8157.2.S1_a_at, orthologous to the query gene, Zm.7051.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	98.9	Ta.8157.2.S1_a_at	At5g61997	-	-	3e+0	At2g05360	-	O.I.	H.G.	S.X.	Please select
0.55	76.8	Ta.11658.1.A1_x_at	At5g61997	-	-	1e-1	At3g23610	dual specificity protein phosphatase (DsPTP1)	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.9496.1.S1_at	At5g61997	-	-	2e-11	At3g06610	DNA-binding enhancer protein-related	O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.1843.1.S1_a_at	At5g61997	-	-	7e+0	At5g55125	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.5442.2.S1_x_at	At5g61997	-	-	7e+0	At5g10070	RNase L inhibitor protein-related	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.3509.1.S1_at	At5g61997	-	-	4e-13	At5g26830	threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)	O.I.	H.G.	S.X.	Please select
0.35	49.8	TaAffx.16341.1.A1_at	At5g61997	-	-	2e+0	At5g37810	NIP4	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.9703.1.A1_a_at	At5g61997	-	-	9e-8	At3g61620	RRP41	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.14555.1.S1_at	At5g61997	-	-	3e-4	At1g65700	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.7612.2.S1_at	At5g61997	-	-	2e-4	At3g49320	-	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.2554.1.S1_x_at	At5g61997	-	-	1e-46	At5g26360	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.28204.2.S1_x_at	At5g61997	-	-	2e-70	At4g14320	60S ribosomal protein L36a/L44 (RPL36aB)	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.8157.2.S1_x_at	At5g61997	-	-	3e+0	At2g05360	-	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.6020.1.S1_x_at	At5g61997	-	-	3e-12	At3g01790	ribosomal protein L13 family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.9601.1.S1_x_at	At5g61997	-	-	2e-55	At4g14320	60S ribosomal protein L36a/L44 (RPL36aB)	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.5442.2.S1_at	At5g61997	-	-	7e+0	At5g10070	RNase L inhibitor protein-related	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.2753.1.A1_at	At5g61997	-	-	8e-2	At1g07210	30S ribosomal protein S18 family	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.22275.1.S1_at	At5g61997	-	-	2e+0	At5g36140	CYP716A2	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.9244.1.S1_x_at	At5g61997	-	-	3e-37	At3g25520	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.25179.1.S1_at	At5g61997	-	-	9e-35	At3g03960	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.17201.1.S1_at	At5g61997	-	-	3e-4	At4g37210	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.2887.1.S1_x_at	At5g61997	-	-	3e-2	At3g53890	40S ribosomal protein S21 (RPS21B)	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.5442.1.S1_at	At5g61997	-	-	2e-3	At2g47580	U1A (SPLICEOSOMAL PROTEIN U1A)	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.13692.3.S1_a_at	At5g61997	-	-	3e-4	At5g23535	KOW domain-containing protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.12678.1.S1_a_at	At5g61997	-	-	2e-6	At2g35790	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.4605.1.S1_at	At5g61997	-	-	7e-7	At5g52040	ATRSP41	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.30628.1.S1_x_at	At5g61997	-	-	4e-38	At2g37600	60S ribosomal protein L36 (RPL36A)	O.I.	H.G.	S.X.	Please select
0.19	22.4	Ta.2887.1.S1_at	At5g61997	-	-	3e-2	At3g53890	40S ribosomal protein S21 (RPS21B)	O.I.	H.G.	S.X.	Please select
0.19	22.4	Ta.6408.1.S1_at	At5g61997	-	-	1e+1	At4g39880	ribosomal protein L23 family protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.824.1.S1_a_at	At5g61997	Ribosomal protein L10A	-	8e-49	At5g22440	60S ribosomal protein L10A (RPL10aC)	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.28699.2.S1_x_at	At5g61997	-	-	3e-11	At2g20450	60S ribosomal protein L14 (RPL14A)	O.I.	H.G.	S.X.	Please select
0.14	15.8	Ta.1831.1.S1_x_at	At5g61997	-	-	1e-56	At1g04480	60S ribosomal protein L23 (RPL23A)	O.I.	H.G.	S.X.	Please select
0.10	11.3	Ta.5670.1.S1_at	At5g61997	-	-	1e-17	At4g33250	EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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