Co-expression analysis

Gene ID Zm.6995.2.A1_at
Gene name prefoldin subunit 3
Homology with ArabidopsisSimilar to At5g49510: PDF3 (PREFOLDIN 3) (HF=7e-3)
Module size 8 genes
NF 0.56
%ile 74.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5674.40.97Zm.6995.2.A1_atBG873820prefoldin subunit 3-7e-3At5g49510PDF3 (PREFOLDIN 3)O.I.H.G.S.X.
0.7792.10.97Zm.2853.1.A1_atAY106605.1hypothetical protein LOC100274141-1e-3At4g29080PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)O.I.H.G.S.X.
0.7188.20.97Zm.12893.1.A1_atCA401197--2e+1At5g07040zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.7188.20.97Zm.14129.1.A1_a_atAY104662.140S ribosomal protein S24-1e-22At3g0492040S ribosomal protein S24 (RPS24A)O.I.H.G.S.X.
0.5571.60.97Zm.9135.2.A1_atBM347885versicolorin reductase-4e-1At5g59990-O.I.H.G.S.X.
0.5571.60.98Zm.12269.2.A1_atAW256119Hypothetical protein LOC100193070-2e-4At3g14130(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeO.I.H.G.S.X.
0.4048.50.97Zm.17291.1.A1_atCF637748Zn-dependent hydrolases, including glyoxylases-2e-5At4g33540metallo-beta-lactamase family proteinO.I.H.G.S.X.
0.3233.40.97Zm.13729.1.S1_atAY106251.1anti-silencing protein 1-1e-20At5g38110ASF1B (ANTI- SILENCING FUNCTION 1B)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.298.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.298.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.498.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.797.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.294.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.194.3GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.893.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.492.2GSM205373Mo17 13 DAP endosperm tissue biological replicate 3GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAPLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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