Co-expression analysis

Gene ID Zm.6977.5.A1_at
Gene name Sucrose synthase
Homology with ArabidopsisSimilar to At5g20830: SUS1 (SUCROSE SYNTHASE 1) (HF=1e-11)
Module size 6 genes
NF 0.63
%ile 84.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.95Zm.6977.5.A1_atAI881652Sucrose synthase-1e-11At5g20830SUS1 (SUCROSE SYNTHASE 1)O.I.H.G.S.X.
0.6785.80.95Zm.18525.1.A1_atCO530497--1e-4At5g28150unknown proteinO.I.H.G.S.X.
0.6077.80.96Zm.13523.1.A1_atAY108425.1--6e-1At5g59470PQ-loop repeat family protein / transmembrane family proteinO.I.H.G.S.X.
0.6077.80.97Zm.19299.1.A1_atBM074654--4e-3At4g09270unknown proteinO.I.H.G.S.X.
0.5674.40.95Zm.13494.1.A1_atAY108782.1--4e-1At2g17300unknown proteinO.I.H.G.S.X.
0.4251.30.94ZmAffx.1.1.S1_s_atAY722707.1hypothetical LOC542518-5e-51At1g57870ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7188.20.94Zm.8110.1.A1_atCF623866hypothetical protein LOC100278802-3e-25At5g49820emb1879 (embryo defective 1879)O.I.H.G.S.X.
0.5775.10.94ZmAffx.225.1.S1_atAI670237--1e+1At5g09470mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.5571.60.96Zm.13751.1.S1_atAY105922.1--9e+0At3g01700AGP11O.I.H.G.S.X.
0.5369.10.88Zm.14785.1.S1_atCB331749hypothetical protein LOC100273215-1e-14At5g41970-O.I.H.G.S.X.
0.5065.70.92ZmAffx.1213.1.S1_atBU051439--2e-1At3g10190calmodulin, putativeO.I.H.G.S.X.
0.5065.70.95Zm.5413.1.A1_atAY112255.1hypothetical protein LOC100274255-5e+0At2g19340membrane protein, putativeO.I.H.G.S.X.
0.5065.70.95Zm.6306.2.A1_atAI691326Protein kinase catalytic domain-1e-10At1g35670ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)O.I.H.G.S.X.
0.5065.70.96Zm.5989.1.A1_atAI666066--3e-1At4g24960ATHVA22DO.I.H.G.S.X.
0.5065.70.97Zm.5451.1.S1_atAI621979--8e-4At4g36970remorin family proteinO.I.H.G.S.X.
0.4658.40.93Zm.13033.1.A1_atAY108193.1--4e-2At5g4770060S acidic ribosomal protein P1 (RPP1C)O.I.H.G.S.X.
0.4455.70.90Zm.2220.2.S1_a_atBQ528737hypothetical protein LOC100277563 /// hypothetical protein LOC100278819-6e+0At3g43520unknown proteinO.I.H.G.S.X.
0.4455.70.91Zm.15340.1.A1_atCO523062--3e+0At3g61630CRF6 (CYTOKININ RESPONSE FACTOR 6)O.I.H.G.S.X.
0.4251.30.91Zm.4277.1.S1_atAI834021--2e-18At3g63280ATNEK4 (NIMA-RELATED KINASE 4)O.I.H.G.S.X.
0.4048.50.83Zm.7472.1.A1_atBM078895hypothetical protein LOC100274148-2e+0At4g23690disease resistance-responsive family protein / dirigent family proteinO.I.H.G.S.X.
0.4048.50.95Zm.14036.1.S1_atX55388.1embryo specific protein1-3e-2At2g40170GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)O.I.H.G.S.X.
0.3945.60.90Zm.7369.1.A1_atCD976747integral membrane protein like-6e-3At1g34020transporter-relatedO.I.H.G.S.X.
0.3538.90.93Zm.12387.1.S1_atAW000286--2e+1Atmg01300-O.I.H.G.S.X.
0.3538.90.92Zm.5853.1.A1_atAI649903hypothetical protein LOC100193409-1e-2At1g47500ATRBP47C' (RNA-binding protein 47C')O.I.H.G.S.X.
0.3336.00.86Zm.6037.1.S1_a_atCA403590hypothetical protein LOC100272475-2e-14At3g56150EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C)O.I.H.G.S.X.
0.3336.00.93Zm.8401.1.A1_x_atCF008000hypothetical protein LOC100278973-8e-2At3g07910-O.I.H.G.S.X.
0.3131.60.95Zm.17638.1.S1_atCK368502--5e+0At5g44460calcium-binding protein, putativeO.I.H.G.S.X.
0.3029.80.91Zm.17924.2.A1_a_atAI677447--8e-17At3g22590RNA pol II accessory factor Cdc73 family proteinO.I.H.G.S.X.
0.2928.10.94Zm.13966.2.S1_a_atCF632224hypothetical protein LOC100274039-4e+0At4g29930basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.2828.10.88Zm.2265.1.S1_atAW330882--3e+0At3g49720unknown proteinO.I.H.G.S.X.
0.2828.10.86Zm.10814.1.A1_atCF051676hypothetical protein LOC100280349-1e-1At2g36420unknown proteinO.I.H.G.S.X.
0.2724.60.91ZmAffx.521.1.A1_atAI711634hypothetical protein LOC100193955-3e+0At5g27880zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.2622.70.93Zm.7080.3.A1_atBM382181hypothetical protein LOC100192855-2e-18At1g0969060S ribosomal protein L21 (RPL21C)O.I.H.G.S.X.
0.2521.30.86Zm.16762.1.A1_s_atBM335792--3e-1At3g02790zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.2521.30.94Zm.18516.1.A1_a_atCO526437--2e+0At5g55570unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.899.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.498.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.698.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.398.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.398.4GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM205423B73xMo17 19 DAP endosperm tissue biological replicate 1GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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