Co-expression analysis

Gene ID Zm.6977.5.A1_at
Gene name Sucrose synthase
Homology with ArabidopsisSimilar to At5g20830: SUS1 (SUCROSE SYNTHASE 1) (HF=1e-11)
Module size 6 genes
NF 0.63
%ile 84.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.95Zm.6977.5.A1_atAI881652Sucrose synthase-1e-11At5g20830SUS1 (SUCROSE SYNTHASE 1)O.I.H.G.S.X.
0.6785.80.95Zm.18525.1.A1_atCO530497--1e-4At5g28150unknown proteinO.I.H.G.S.X.
0.6077.80.96Zm.13523.1.A1_atAY108425.1--6e-1At5g59470PQ-loop repeat family protein / transmembrane family proteinO.I.H.G.S.X.
0.6077.80.97Zm.19299.1.A1_atBM074654--4e-3At4g09270unknown proteinO.I.H.G.S.X.
0.5674.40.95Zm.13494.1.A1_atAY108782.1--4e-1At2g17300unknown proteinO.I.H.G.S.X.
0.4251.30.94ZmAffx.1.1.S1_s_atAY722707.1hypothetical LOC542518-5e-51At1g57870ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.899.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.498.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.698.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.398.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.398.4GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM205423B73xMo17 19 DAP endosperm tissue biological replicate 1GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.157995.1.A1_at, orthologous to the query gene, Zm.6977.5.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5582.2PtpAffx.157995.1.A1_atAt5g20830hypothetical protein-1e+0At1g11320unknown proteinO.I.H.G.S.X.
0.2747.1PtpAffx.210320.1.S1_atAt5g20830hypothetical protein-4e-1At3g54780zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2543.6PtpAffx.216164.1.S1_atAt5g20830hypothetical protein-2e+0At5g60910AGL8 (agamous-like 8)O.I.H.G.S.X.
0.2034.6PtpAffx.218241.1.S1_atAt5g20830hypothetical protein-2e+0At2g45410LBD19 (LOB DOMAIN-CONTAINING PROTEIN 19)O.I.H.G.S.X.
0.1729.1PtpAffx.201168.1.S1_atAt5g20830hypothetical protein-3e-1At4g27590copper-binding protein-relatedO.I.H.G.S.X.
0.1219.6PtpAffx.608.5.A1_atAt5g20830--6e-2At3g50540unknown proteinO.I.H.G.S.X.
0.0914.6PtpAffx.217324.1.S1_atAt5g20830hypothetical protein-4e+0At5g64920CIP8 (COP1-INTERACTING PROTEIN 8)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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