Co-expression analysis

Gene ID	Zm.6975.1.S1_at
Gene name	hypothetical protein LOC100272316
Homology with Arabidopsis	Similar to At3g20050: ATTCP-1 (HF=4e-40)
Module size	6 genes
NF	0.40
%ile	45.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.6975.1.S1_at	AW066660	hypothetical protein LOC100272316	-	4e-40	At3g20050	ATTCP-1	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.3818.1.S1_at	CF034965	-	-	2e-1	At1g77570	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.4560.2.S1_at	AY106577.1	-	-	2e-11	At3g59350	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	Zm.10162.1.A1_at	AW155725	-	-	3e-1	At3g57230	AGL16 (AGAMOUS-LIKE 16)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.98	Zm.14149.1.A1_at	AY111524.1	-	-	1e+0	At5g55135	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.97	Zm.8378.1.A1_at	BM073885	hypothetical protein LOC100273227	-	6e+0	At3g26860	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.5	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
4.8	96.6	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage