Co-expression analysis

Gene ID	Zm.6905.4.S1_a_at
Gene name	Histone H1-like protein
Homology with Arabidopsis	Similar to At1g07980: NF-YC10 (NUCLEAR FACTOR Y, SUBUNIT C10) (HF=2e-1)
Module size	11 genes
NF	0.50
%ile	63.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	81.1	0.95	Zm.6905.4.S1_a_at	AI881845	Histone H1-like protein	-	2e-1	At1g07980	NF-YC10 (NUCLEAR FACTOR Y, SUBUNIT C10)	O.I.	H.G.	S.X.	Please select
0.76	91.1	0.96	Zm.4691.1.A1_at	AI734661	-	-	1e+0	At5g60520	late embryogenesis abundant protein-related / LEA protein-related	O.I.	H.G.	S.X.	Please select
0.72	88.6	0.96	Zm.2827.1.A1_at	AY108627.1	-	-	3e+0	At3g51870	binding / transporter	O.I.	H.G.	S.X.	Please select
0.70	87.0	0.98	Zm.5474.1.S1_at	CO531804	hypothetical protein LOC100194401	-	2e-3	At4g11450	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.9625.1.A1_x_at	BM340508	Hypothetical protein LOC100216879	-	3e-1	At4g33660	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	Zm.3837.1.S1_at	AI978033	epoxide hydrolase 2	-	5e-2	At2g26750	epoxide hydrolase, putative	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.98	Zm.16853.1.A1_at	AY103985.1	-	-	2e-18	At5g05920	DHS (DEOXYHYPUSINE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.13114.1.A1_at	CA404567	chloroplast outer envelope protein 86	-	4e-3	At5g57720	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.7407.1.A1_x_at	BM074289	-	-	3e-7	At4g37760	SQE3 (squalene epoxidase 3)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.4034.1.A1_at	CF972567	-	-	3e-7	At1g55680	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	Zm.18117.1.S1_at	CN844859	hypothetical protein LOC100191821	-	1e-2	At3g17440	NPSN13 (NOVEL PLANT SNARE 13)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.7	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.0	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage