Co-expression analysis

Gene ID	Zm.6894.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g69830: AMY3 (ALPHA-AMYLASE-LIKE 3) (HF=7e-47)
Module size	6 genes
NF	0.36
%ile	37.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.99	Zm.6894.1.A1_at	BM380620	-	-	7e-47	At1g69830	AMY3 (ALPHA-AMYLASE-LIKE 3)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.99	Zm.16049.1.S1_at	BM888637	40S ribosomal protein S28	-	8e-5	At5g03850	40S ribosomal protein S28 (RPS28B)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.99	Zm.6195.1.A1_x_at	AI668513	hypothetical protein LOC100275106	-	4e+0	At4g17790	-	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.99	Zm.5825.1.A1_at	AI649790	hypothetical protein LOC100279429	-	1e-2	At1g10390	nucleoporin family protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.99	Zm.17513.1.A1_at	BM074532	MFP1 attachment factor 1	-	5e+0	At1g22840	CYTC-1 (CYTOCHROME C-1)	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.99	Zm.17283.1.A1_at	CK368046	hypothetical protein LOC100194129	-	1e-1	At3g51960	bZIP family transcription factor	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.6	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the barley gene, Contig14542_at, orthologous to the query gene, Zm.6894.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	72.0	Contig14542_at	At1g69830	-	-	4e-23	At1g69830	AMY3 (ALPHA-AMYLASE-LIKE 3)	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig15261_at	At1g69830	-	-	2e+0	At3g56270	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig9720_at	At1g69830	-	-	2e+0	At3g10150	PAP16 (PURPLE ACID PHOSPHATASE 16)	O.I.	H.G.	S.X.	Please select
0.40	53.1	HVSMEl0003A05r2_at	At1g69830	-	-	1e+0	At3g59320	integral membrane protein, putative	O.I.	H.G.	S.X.	Please select
0.38	49.5	HVSMEg0015H12r2_s_at	At1g69830	-	-	1e+0	At5g18040	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig2425_s_at	At1g69830	-	-	2e+0	At5g06900	CYP93D1	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig1795_at	At1g69830	-	-	3e-16	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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