Co-expression analysis

Gene ID	Zm.6894.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g69830: AMY3 (ALPHA-AMYLASE-LIKE 3) (HF=7e-47)
Module size	6 genes
NF	0.36
%ile	37.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.99	Zm.6894.1.A1_at	BM380620	-	-	7e-47	At1g69830	AMY3 (ALPHA-AMYLASE-LIKE 3)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.99	Zm.16049.1.S1_at	BM888637	40S ribosomal protein S28	-	8e-5	At5g03850	40S ribosomal protein S28 (RPS28B)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.99	Zm.6195.1.A1_x_at	AI668513	hypothetical protein LOC100275106	-	4e+0	At4g17790	-	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.99	Zm.5825.1.A1_at	AI649790	hypothetical protein LOC100279429	-	1e-2	At1g10390	nucleoporin family protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.99	Zm.17513.1.A1_at	BM074532	MFP1 attachment factor 1	-	5e+0	At1g22840	CYTC-1 (CYTOCHROME C-1)	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.99	Zm.17283.1.A1_at	CK368046	hypothetical protein LOC100194129	-	1e-1	At3g51960	bZIP family transcription factor	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.6	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.9717.2.S1_at, orthologous to the query gene, Zm.6894.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.8	GmaAffx.9717.2.S1_at	At1g69830	-	-	5e-33	At1g69830	AMY3 (ALPHA-AMYLASE-LIKE 3)	O.I.	H.G.	S.X.	Please select
0.42	59.3	GmaAffx.60432.1.S1_at	At1g69830	-	-	4e-19	At1g21980	ATPIP5K1 (PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 1)	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.17538.1.S1_at	At1g69830	-	-	1e+0	At5g66110	metal ion binding	O.I.	H.G.	S.X.	Please select
0.30	40.4	GmaAffx.77608.1.S1_at	At1g69830	-	-	7e-27	At2g25760	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	GmaAffx.74741.1.S1_at	At1g69830	-	-	1e-12	At4g03200	catalytic	O.I.	H.G.	S.X.	Please select
0.27	35.7	Gma.8275.2.S1_at	At1g69830	-	-	1e-25	At1g17145	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.27	35.7	GmaAffx.50094.1.S1_at	At1g69830	-	-	7e-118	At5g19010	MPK16	O.I.	H.G.	S.X.	Please select
0.26	33.9	GmaAffx.273.2.S1_at	At1g69830	-	-	2e-1	At3g01550	PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2)	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.1837.2.S1_at	At1g69830	-	-	1e-2	At1g34470	permease-related	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.16801.1.S1_at	At1g69830	-	-	3e-19	At3g60260	phagocytosis and cell motility protein ELMO1-related	O.I.	H.G.	S.X.	Please select
0.24	30.9	Gma.7264.2.S1_at	At1g69830	transcription factor bZIP87	-	6e-9	At2g35530	bZIP transcription factor family protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	GmaAffx.449.1.S1_at	At1g69830	-	-	2e+0	At2g28105	-	O.I.	H.G.	S.X.	Please select
0.22	28.1	GmaAffx.61604.1.S1_at	At1g69830	-	-	1e-9	At3g51370	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.22	28.1	Gma.8062.2.S1_a_at	At1g69830	-	-	4e-14	At2g21630	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.21	26.6	Gma.3754.2.S1_at	At1g69830	-	-	4e-16	At3g18430	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.20	25.1	Gma.4006.1.S1_at	At1g69830	-	-	1e+0	At3g57000	nucleolar essential protein-related	O.I.	H.G.	S.X.	Please select
0.18	22.3	GmaAffx.55210.2.S1_at	At1g69830	-	-	3e-32	At2g43070	protease-associated (PA) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	Gma.2544.2.S1_a_at	At1g69830	phosphatidylinositol 3-kinase	-	1e-105	At1g60490	ATVPS34	O.I.	H.G.	S.X.	Please select
0.17	21.2	GmaAffx.84623.1.S1_at	At1g69830	-	-	1e-12	At1g05500	NTMC2T2.1	O.I.	H.G.	S.X.	Please select
0.16	19.7	Gma.7090.2.S1_at	At1g69830	-	-	6e-8	At5g13560	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	18.7	Gma.7026.2.S1_a_at	At1g69830	-	-	1e-13	At1g28320	DEG15	O.I.	H.G.	S.X.	Please select
0.14	17.5	GmaAffx.38743.1.S1_at	At1g69830	-	-	4e-4	At5g23340	-	O.I.	H.G.	S.X.	Please select
0.14	17.5	GmaAffx.82992.1.S1_at	At1g69830	-	-	4e-29	At3g10380	SEC8 (SUBUNIT OF EXOCYST COMPLEX 8)	O.I.	H.G.	S.X.	Please select
0.14	17.5	Gma.7927.2.S1_s_at	At1g69830	-	-	2e+1	At5g10160	beta-hydroxyacyl-ACP dehydratase, putative	O.I.	H.G.	S.X.	Please select
0.13	16.3	GmaAffx.9717.1.A1_at	At1g69830	-	-	5e+0	At4g26555	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.	Please select
0.12	15.1	Gma.1066.1.S1_at	At1g69830	-	-	4e-67	At3g13670	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.12	15.1	Gma.2668.2.A1_at	At1g69830	-	-	4e-6	At5g42520	ATBPC6	O.I.	H.G.	S.X.	Please select
0.11	14.2	GmaAffx.67790.1.S1_at	At1g69830	-	-	9e-17	At2g01690	binding	O.I.	H.G.	S.X.	Please select
0.08	11.0	GmaAffx.78395.1.S1_at	At1g69830	-	-	2e-5	At1g42470	patched family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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