Co-expression analysis

Gene ID Zm.6894.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g69830: AMY3 (ALPHA-AMYLASE-LIKE 3) (HF=7e-47)
Module size 6 genes
NF 0.36
%ile 37.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.99Zm.6894.1.A1_atBM380620--7e-47At1g69830AMY3 (ALPHA-AMYLASE-LIKE 3)O.I.H.G.S.X.
0.6077.80.99Zm.16049.1.S1_atBM88863740S ribosomal protein S28-8e-5At5g0385040S ribosomal protein S28 (RPS28B)O.I.H.G.S.X.
0.4455.70.99Zm.6195.1.A1_x_atAI668513hypothetical protein LOC100275106-4e+0At4g17790-O.I.H.G.S.X.
0.2318.60.99Zm.5825.1.A1_atAI649790hypothetical protein LOC100279429-1e-2At1g10390nucleoporin family proteinO.I.H.G.S.X.
0.2318.60.99Zm.17513.1.A1_atBM074532MFP1 attachment factor 1-5e+0At1g22840CYTC-1 (CYTOCHROME C-1)O.I.H.G.S.X.
0.1811.60.99Zm.17283.1.A1_atCK368046hypothetical protein LOC100194129-1e-1At3g51960bZIP family transcription factorO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.698.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.598.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.498.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.598.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.298.4GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.997.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.696.4GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g69830, orthologous to the query gene, Zm.6894.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.5065.3At1g69830843319AMY3 (ALPHA-AMYLASE-LIKE 3)Encodes a plastid-localized α-amylase. Expression is reduced in the SEX4 mutant. Loss of function mutations show normal diurnal pattern of starch accumulation/degradation. Expression follows circadian rhythms.O.I.H.G.S.X.
0.9195.6At1g10760837619SEX1 (STARCH EXCESS 1)Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.O.I.H.G.S.X.
0.8391.4At3g46970823850PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2)Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen.O.I.H.G.S.X.
0.6781.6At5g26570832706ATGWD3chloroplastidic phosphoglucan, water dikinase (PWD) which is required for normal degradation of leaf starch in Arabidopsis. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C3 position.O.I.H.G.S.X.
0.5368.6At2g40840818682DPE2 (DISPROPORTIONATING ENZYME 2)Encodes a cytosolic protein with transglucosidase and amylomaltase activity. It is an essential component of the pathway from starch to sucrose and cellular metabolism in leaves at night. The protein binds to heteroglycans and utilizes glucose, mannose and xylose as acceptors. Fucose and galactose can also act as acceptors but less efficiently than the previous three. It was also was also recently reported to act on maltodextrins. On the other hand, arabinose and fructose were not efficiently used. Its role probably includes metabolizing maltose exported from the chloroplast. Studies using maltose extracted from the double mutant be2-1 be3-2 showed that this enzyme is preferentially active of β-maltose.O.I.H.G.S.X.
0.4659.8At5g64860836609DPE1 (DISPROPORTIONATING ENZYME)Encodes a maltotriose-metabolizing enzyme with chloroplastic α-1,4-glucanotransferase activity. Mutant has altered starch degradation.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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