Co-expression analysis

Gene ID	Zm.6881.1.A1_at
Gene name	hypothetical protein LOC100272717 /// zinc finger CCCH type domain-containing protein ZFN-like 6
Homology with Arabidopsis	Similar to At4g17240: unknown protein (HF=4e-2)
Module size	7 genes
NF	0.28
%ile	24.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.97	Zm.6881.1.A1_at	AW066811	hypothetical protein LOC100272717 /// zinc finger CCCH type domain-containing protein ZFN-like 6	-	4e-2	At4g17240	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.16066.2.A1_a_at	AW061910	-	-	4e+0	At5g57920	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.3050.2.A1_at	CO523621	ras-related protein Rab-18	-	3e+0	At5g40700	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.97	Zm.12361.1.S1_at	BQ744964	-	-	5e+0	At5g39190	GER2 (GERMIN-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.96	Zm.4416.1.S1_at	AY536525.1	phospholipase C	-	5e-3	At5g58700	phosphoinositide-specific phospholipase C family protein	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.97	Zm.4356.1.S1_at	AY107334.1	disulfide oxidoreductase/ electron carrier/ oxidoreductase	-	2e-1	At2g23430	ICK1	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.97	Zm.7150.2.A1_x_at	CK370688	hypothetical protein LOC100279278	-	9e-8	At5g15470	GAUT14 (Galacturonosyltransferase 14)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.7	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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