Co-expression analysis

Gene ID Zm.6787.1.A1_a_at
Gene name hypothetical protein LOC100274407 /// UMP synthase
Homology with ArabidopsisSimilar to At3g54470: uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (HF=2e-17)
Module size 13 genes
NF 0.58
%ile 76.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7691.10.99Zm.6787.1.A1_a_atAF277454.1hypothetical protein LOC100274407 /// UMP synthase-2e-17At3g54470uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)O.I.H.G.S.X.
0.6785.80.99Zm.17310.1.A1_atCK368488--7e+0At5g42000ORMDL family proteinO.I.H.G.S.X.
0.6582.10.99Zm.16834.1.A1_atAY109979.1--4e-1At1g64370unknown proteinO.I.H.G.S.X.
0.6582.10.99Zm.7176.1.A1_atCF629363--5e+0At5g05210nucleolar matrix protein-relatedO.I.H.G.S.X.
0.6481.70.99Zm.2979.1.S1_atBG841486trafficking protein particle complex protein 2-2e-12At1g80500-O.I.H.G.S.X.
0.6481.70.99Zm.4867.1.A1_atCO529638hypothetical protein LOC100279332-6e-6At1g11860aminomethyltransferase, putativeO.I.H.G.S.X.
0.6179.50.99Zm.393.1.S1_atU41466.1glossy15-3e-7At5g67180AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.5674.40.99Zm.3938.1.A1_atCB350990--2e+0At5g63310NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)O.I.H.G.S.X.
0.5369.10.99Zm.14470.1.S1_a_atCA400454hypothetical protein LOC100279736 /// GTP-binding protein SAR1A-2e-19At1g09180ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1)O.I.H.G.S.X.
0.4861.30.99Zm.16593.4.S1_atCA401361hypothetical protein LOC100194160-2e-4At5g51840unknown proteinO.I.H.G.S.X.
0.4759.90.99Zm.5213.1.A1_atCF035372protein binding protein-2e-4At5g08139zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4048.50.99Zm.15932.1.A1_atAJ577238.1beta3-glucuronyltransferase-8e-1At5g28610-O.I.H.G.S.X.
0.2828.10.99Zm.221.1.A1_atU28376.1calcium-dependent protein kinase-4e-25At3g20410CPK9 (calmodulin-domain protein kinase 9)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.598.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.098.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.698.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.398.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM202314Mo17 19 day after pollination embryo tissue, biological replicate 2GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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