Co-expression analysis

Gene ID	Zm.6771.1.A1_at
Gene name	growth-regulating factor 13-like
Homology with Arabidopsis	Similar to At2g36400: AtGRF3 (GROWTH-REGULATING FACTOR 3) (HF=3e-5)
Module size	8 genes
NF	0.43
%ile	50.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.96	Zm.6771.1.A1_at	CF629244	growth-regulating factor 13-like	-	3e-5	At2g36400	AtGRF3 (GROWTH-REGULATING FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.13729.1.S1_at	AY106251.1	anti-silencing protein 1	-	1e-20	At5g38110	ASF1B (ANTI- SILENCING FUNCTION 1B)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.14993.1.S1_at	AY104383.1	NAD-dependent isocitrate dehydrogenase	-	1e-47	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.97	Zm.14129.1.A1_a_at	AY104662.1	40S ribosomal protein S24	-	1e-22	At3g04920	40S ribosomal protein S24 (RPS24A)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.17291.1.A1_at	CF637748	Zn-dependent hydrolases, including glyoxylases	-	2e-5	At4g33540	metallo-beta-lactamase family protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.10371.1.A1_at	BI542530	low phytic acid 1	-	9e-15	At1g04120	ATMRP5	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.7741.2.A1_a_at	BM079724	-	-	4e+0	Atmg00110	-	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	Zm.12993.1.A1_at	CF632679	hypothetical protein LOC100273862	-	3e-2	At3g04380	SUVR4	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.7	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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