Co-expression analysis

Gene ID Zm.6754.1.A1_at
Gene name hypothetical protein LOC100279965
Homology with ArabidopsisSimilar to At4g36530: hydrolase, alpha/beta fold family protein (HF=4e-2)
Module size 6 genes
NF 0.45
%ile 54.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.97Zm.6754.1.A1_atAI396158hypothetical protein LOC100279965-4e-2At4g36530hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.6077.80.98Zm.3999.1.S1_atCF024332hypothetical protein LOC100276811-3e+0At5g39860PRE1 (PACLOBUTRAZOL RESISTANCE1)O.I.H.G.S.X.
0.4455.70.97Zm.7611.2.A1_atBM268818--2e-3At1g49400emb1129 (embryo defective 1129)O.I.H.G.S.X.
0.4251.30.97Zm.3767.2.A1_atBM073671--1e-7At5g20890chaperonin, putativeO.I.H.G.S.X.
0.4048.50.97Zm.6644.2.A1_atAY109212.1--4e+0At5g42050-O.I.H.G.S.X.
0.3131.60.97Zm.2716.1.A1_atCD440659--3e+0At4g28700AMT1O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6179.50.97Zm.6665.1.S1_atAY104195.1hypothetical protein LOC100274698-3e-7At5g49720ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)O.I.H.G.S.X.
0.6077.80.97Zm.17090.1.S1_atAW155707transferase, transferring glycosyl groups-2e-4At2g20810GAUT10 (GALACTURONOSYLTRANSFERASE 10)O.I.H.G.S.X.
0.5976.10.97Zm.10827.1.S1_atBQ619419--8e-2At1g65730YSL7 (YELLOW STRIPE LIKE 7)O.I.H.G.S.X.
0.4658.40.93Zm.4405.1.A1_atBG841902vacuolar sorting protein 4b-5e+0At2g40790ATCXXS2 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1)O.I.H.G.S.X.
0.4352.80.98Zm.15852.2.A1_atAY108720.1--1e-41At5g03430phosphoadenosine phosphosulfate (PAPS) reductase family proteinO.I.H.G.S.X.
0.4048.50.95Zm.18138.1.A1_atCF002755hypothetical protein LOC100216629-9e-5At1g16810unknown proteinO.I.H.G.S.X.
0.3844.20.97Zm.4335.3.A1_atAY109325.1--1e-3At2g24050MIF4G domain-containing protein / MA3 domain-containing proteinO.I.H.G.S.X.
0.3641.30.94Zm.13195.1.S1_atAI973328--7e-1At2g18590carbohydrate transmembrane transporter/ sugar:hydrogen symporterO.I.H.G.S.X.
0.3641.30.97Zm.15201.1.A1_atBM348856--3e-1At4g33660unknown proteinO.I.H.G.S.X.
0.3538.90.96Zm.12606.1.S1_atAY280629.1single myb histone3-3e-3At1g17520DNA-binding protein, putativeO.I.H.G.S.X.
0.3538.90.96Zm.1494.1.A1_atBG842622--1e-2At2g20825ULT2 (ULTRAPETALA 2)O.I.H.G.S.X.
0.3336.00.94Zm.13826.1.S1_atBQ293656--2e-5At1g75200flavodoxin family protein / radical SAM domain-containing proteinO.I.H.G.S.X.
0.3131.60.96Zm.5693.1.A1_atAI629973hypothetical protein LOC100193539-6e-4At1g35510unknown proteinO.I.H.G.S.X.
0.3131.60.96Zm.8900.2.A1_atAI75904050S ribosomal protein L9-3e+0At3g01328-O.I.H.G.S.X.
0.3131.60.97Zm.18485.1.S1_atAY104422.1DNA binding protein-4e-8At1g71260ATWHY2 (A. THALIANA WHIRLY 2)O.I.H.G.S.X.
0.3029.80.97Zm.5048.6.A1_a_atBM380925hypothetical protein LOC100279926 /// endoplasmin-3e-36At4g24190SHD (SHEPHERD)O.I.H.G.S.X.
0.2928.10.96Zm.4288.1.A1_atAI622454cyclin IaZm-4e-3At2g26760CYCB1O.I.H.G.S.X.
0.2928.10.97Zm.7392.1.A1_atCF041444hypothetical protein LOC100276454-6e+0At5g42850-O.I.H.G.S.X.
0.2828.10.94Zm.12337.1.S1_atCN844316--4e+0At5g36662-O.I.H.G.S.X.
0.2724.60.97Zm.19300.1.S1_atCO522732DNA repair protein RAD51-3e+0At2g45280ATRAD51CO.I.H.G.S.X.
0.2724.60.96Zm.11846.1.A1_atCO526718SBP-domain protein 7-5e+0At1g72080unknown proteinO.I.H.G.S.X.
0.2724.60.97Zm.3486.2.A1_atAY111804.1--3e-1At5g52545unknown proteinO.I.H.G.S.X.
0.2521.30.96Zm.7132.1.A1_a_atBM381861hypothetical protein LOC100275673-5e+0At5g41761unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.199.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.498.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.198.4GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM253282ZM_8d_SG200_3Alu_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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