Co-expression analysis

Gene ID	Zm.6754.1.A1_at
Gene name	hypothetical protein LOC100279965
Homology with Arabidopsis	Similar to At4g36530: hydrolase, alpha/beta fold family protein (HF=4e-2)
Module size	6 genes
NF	0.45
%ile	54.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.97	Zm.6754.1.A1_at	AI396158	hypothetical protein LOC100279965	-	4e-2	At4g36530	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.3999.1.S1_at	CF024332	hypothetical protein LOC100276811	-	3e+0	At5g39860	PRE1 (PACLOBUTRAZOL RESISTANCE1)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.7611.2.A1_at	BM268818	-	-	2e-3	At1g49400	emb1129 (embryo defective 1129)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.97	Zm.3767.2.A1_at	BM073671	-	-	1e-7	At5g20890	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.6644.2.A1_at	AY109212.1	-	-	4e+0	At5g42050	-	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.2716.1.A1_at	CD440659	-	-	3e+0	At4g28700	AMT1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.1	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the barley gene, Contig8550_s_at, orthologous to the query gene, Zm.6754.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	Contig8550_s_at	At4g36530	-	-	9e-1	At3g48660	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	Contig13308_at	At4g36530	-	-	3e-27	At4g09720	Ras-related GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig23603_at	At4g36530	-	-	8e-2	At5g40870	AtUK/UPRT1 (Uridine kinase/Uracil phosphoribosyltransferase 1)	O.I.	H.G.	S.X.	Please select
0.63	80.3	HV_CEb0001H12r2_at	At4g36530	-	-	4e+0	At5g16740	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	Contig10484_at	At4g36530	-	-	6e-10	At3g24650	ABI3 (ABA INSENSITIVE 3)	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig8551_at	At4g36530	-	-	8e-3	At3g55050	serine/threonine protein phosphatase 2C (PP2C6)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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